Thermodesulfomicrobium sp. WS: TDMWS_05950
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Entry
TDMWS_05950 CDS
T08730
Symbol
gyrB
Name
(GenBank) DNA gyrase subunit B
KO
K02470
DNA gyrase subunit B [EC:
5.6.2.2
]
Organism
thew
Thermodesulfomicrobium sp. WS
Brite
KEGG Orthology (KO) [BR:
thew00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
thew03032
]
TDMWS_05950 (gyrB)
03400 DNA repair and recombination proteins [BR:
thew03400
]
TDMWS_05950 (gyrB)
Enzymes [BR:
thew01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.2 DNA topoisomerase (ATP-hydrolysing)
TDMWS_05950 (gyrB)
DNA replication proteins [BR:
thew03032
]
Prokaryotic type
DNA Topoisomerases
TDMWS_05950 (gyrB)
DNA repair and recombination proteins [BR:
thew03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
TDMWS_05950 (gyrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_gyraseB
DNA_gyraseB_C
Toprim
HATPase_c
GyrB_hook
HATPase_c_3
Motif
Other DBs
NCBI-ProteinID:
BDV00510
LinkDB
All DBs
Position
complement(641820..644207)
Genome browser
AA seq
795 aa
AA seq
DB search
MSTSYTASNITVLEGLSAVRKRPAMYIGSTNSAGLHHLVYEVVDNSIDEAMAGFCTHIHV
TLHLDNSITVADNGRGIPVDIHPKENRPAVEVVMTVLHAGGKFDNATYKVSGGLHGVGVS
VVNALSEYLEVTVSRDGKRHYQRYARGVPQCPLKELGPASATGTVVRFKPDEEIFEETEY
QAEILAKRFEELAYLNPGLTIEFHDEKSQETHRYHFEGGLVSFIKNKNGDDGIHKVISGK
GEVDGISIDFALQYSSTYKENVYTFANNIRTKEGGTHLIGFKTALTRAINTYIANSDLPK
KQKQKVSGDDVREGLTAVVSVRIPNPQFEGQTKTKLGNSEVAGHVATVVYERITAFFGEN
PKDARLIIDKVVDAARAREAARRAKELVRRKGALSDHSLPGKLADCQSKVAEECELFLVE
GDSAGGSAKQGRNPKFQAILPLRGKILNVEKTRFDKMLQNKEIRALITAMGAGIGEEDTD
LSRLRYGKIILMTDADVDGAHIRTLLLTFFYRQYQELIESGHLYIAQPPLYRVHKGSFER
YIKNEEEMTQFLLSRAAEEISLRQGECWIQGEPLRALLQDAVFLRAMAREHAGLGIPEPL
FFTLVGHGMTLDGDEIRCGHFPEAFTAALAARGVRLMVEHEDDPAAAGMEGRFVVRLWEA
DGHEVRLGAEFFTSKRYRRAFELATRMAQAHPEPVFVFRHKDAEAQADSPLTFLDAVFAA
VQKGLNVQRYKGLGEMNPAQLWETTMNPATRTLLQVTIEDAEEANELFEKLMGDKVEPRR
EFIERNALAVRDLDI
NT seq
2388 nt
NT seq
+upstream
nt +downstream
nt
atgagcacctcctacaccgcaagcaacatcactgtcctggaaggcctctctgcagtccgc
aagcggcccgccatgtatattggctccaccaacagcgcaggcctccaccacctggtgtac
gaagtggtggacaactccatcgacgaggccatggccgggttctgcacccatatccacgtg
accctccatctcgacaactccatcaccgtggcggacaacggccgcggcattccggtggac
atccatcccaaggaaaaccgacctgccgtggaagtggtcatgaccgtgctccatgccggc
ggcaagttcgacaacgccacctacaaggtctccggcggactgcacggcgtaggggtgtcc
gtggtcaacgccctgtccgagtacctggaggtgacggtgagccgggacggcaaacgccac
taccagcgctacgcccgcggcgtcccccaatgcccgctcaaggaactcgggccggcgtcg
gccaccggcaccgtggtccggttcaaacccgatgaagagatcttcgaggagaccgaatac
caggccgaaattctggccaagcgcttcgaggagctggcctacctcaacccgggactcacc
atcgagttccacgacgaaaagagccaggagacccaccgctaccactttgaaggcggcctg
gtctccttcatcaagaataaaaacggcgacgacggcattcacaaggtgatctccggcaaa
ggagaggtggacggcatctccatcgacttcgcgctgcagtattcctccacctacaaggaa
aacgtctacacctttgccaacaatatccgcaccaaagaaggcgggacccatctcattgga
ttcaaaactgcgctcacgcgcgccatcaatacctatattgccaacagcgatctccctaaa
aaacaaaagcagaaagtgtccggcgatgacgtgcgcgaaggattgactgcagtagtcagc
gtgcgcatccccaatcctcaattcgagggacagaccaagaccaagctcggcaattccgaa
gtggccggacacgtggctaccgtggtctatgagcgcatcaccgcattcttcggcgaaaat
cccaaagatgcccgtttgatcatcgacaaggtggtggatgcggcacgtgcccgggaagcc
gcccgccgcgccaaggagctggtgcgccgcaaaggggcgctgtcggatcattcgctgccc
ggaaagcttgcggactgccaaagcaaagtggcggaagaatgcgaactcttcctcgtggag
ggcgactccgcaggaggctccgccaaacagggccgcaatcccaagtttcaggccatcttg
cccctgcgcggcaagatcctcaacgtggagaagacccgctttgacaagatgctccaaaac
aaggagatccgcgccctcatcaccgccatgggcgcaggcatcggcgaggaggacaccgac
ctctcgcggctgcgctacggcaagatcatcctcatgaccgatgccgacgtggacggcgcc
catatccgcaccttgctgctgaccttcttctaccgccagtaccaggagctcatcgagtcc
gggcacctctatatcgcccagccgcccctctaccgggtgcacaaaggctccttcgagcgc
tacatcaaaaacgaagaggagatgacccaattcctcctttcccgtgccgccgaggaaatc
tccttgcgccaaggcgagtgctggatccagggagagccgctacgggcactcctccaggac
gcggtgtttctgcgcgccatggcccgggagcacgcgggtctcggcatcccggagcccctc
tttttcaccttggtggggcacgggatgaccttggacggcgacgaaatccggtgtggacat
ttccctgaggcctttaccgccgcgctggccgcgcgcggcgtacgcctcatggtggagcac
gaagacgaccccgctgctgccggcatggaaggccgcttcgtggtgcgactctgggaagcg
gatgggcatgaggtgcgcctcggggcggagttcttcacctccaagcgctaccgccgggcc
ttcgagctggccacccgcatggcccaggcccaccccgagccggtgttcgttttccgccac
aaagacgccgaggcccaggccgactcgccgctcacgtttctcgacgccgtttttgccgcg
gtgcaaaaaggcctgaacgtgcaacgctacaaaggcttgggtgagatgaacccggcgcag
ctgtgggaaaccaccatgaaccccgcaacccgcacgctcctgcaagtcaccatcgaagac
gccgaagaggccaacgagctcttcgaaaaactcatgggcgacaaagtcgagccgcgccgg
gagttcatcgaacgcaacgccctcgctgtccgcgatctcgatatctaa
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