Thermodesulfomicrobium sp. WS: TDMWS_07100
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Entry
TDMWS_07100 CDS
T08730
Symbol
dnaE
Name
(GenBank) DNA-directed DNA polymerase
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
thew
Thermodesulfomicrobium sp. WS
Pathway
thew03030
DNA replication
thew03430
Mismatch repair
thew03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
thew00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TDMWS_07100 (dnaE)
03430 Mismatch repair
TDMWS_07100 (dnaE)
03440 Homologous recombination
TDMWS_07100 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
thew03032
]
TDMWS_07100 (dnaE)
03400 DNA repair and recombination proteins [BR:
thew03400
]
TDMWS_07100 (dnaE)
Enzymes [BR:
thew01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
TDMWS_07100 (dnaE)
DNA replication proteins [BR:
thew03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
TDMWS_07100 (dnaE)
DNA repair and recombination proteins [BR:
thew03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
TDMWS_07100 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
Motif
Other DBs
NCBI-ProteinID:
BDV00625
LinkDB
All DBs
Position
767809..771258
Genome browser
AA seq
1149 aa
AA seq
DB search
MHTFVHLHCHTEYSLLDGAIRLRDLCARAVDYGMGAAAVTDHGNLFAALPFYLEAKKHGI
RPIIGCEVYVTEDMRDRSDKKRFHLVLLAQNLVGYHNLVRLVSAGFLEGFYYKPRVDKEC
LKRHAEGLIALSACIKGEIPWTLTQVGMDAGLEVARQYAAIFPGRLYLELQENGLPEQEE
ANTRLLEAASALGLPLVATNDCHYLEREDFEAHDALLCIGTGKTVDTPGRLRFSSDTFYF
RPPEEMEAAFAHVPEALENAVRIADLCQVEFDLGRHHFPVYTAPEGRSMEEEFQRLAREG
LEARLRQLPYAVDPQEYRDRLEHELSVITEKGFAPYFLIVQDFINWAKSQGIPVGPGRGS
AAGSLVAYALRITDLDPIRYRLYFERFLNAERASLPDIDVDFCYNRRDEVIRYVTEKYGA
DRVAQIVAFGTMKAKGVVRDVARVLGIPLKDADRVAKLIPDDLKMTLDKALEQEPELRAL
VENDPVFAKLFHISRRLEGLARHPSQHAAGIVISREPMVEYLPLHVGKNGEVVTQFDMKK
VEMVGLIKFDFLGLKTLTVIHDALRLIAQGGGTPPDLETLPLDDAATYALLCRGETDGVF
QLESEGMRRVLRSLKPSCFEDIIALLALYRPGPLESGMVDDFIDRKHGRKPIEYAYPELA
SRLHPILEDTYGVILYQEQVMKIASELANYSMGEGDILRRAMGKKNPEEMAKQRSRFLSG
ARENGISEEAAGWIFDLMEKFAGYGFNKAHSAAYALISYQTAYLKAHFPAEFMAATITSE
VSNSDKVLAHINACRDMGLTILPPDVNQSRYEFTVEAGAVRYGLSGIKGVGEAAVQGMVA
ERDAHGPFASLLDFCCRVDLRKANKKVLEALIKAGAMDTFGCHRGLLLAAVEPVMAMAQR
QAKRKRSGQLSFAAVVDASTCRLTGIGADVPIEGAVRVPDDAEKLRMEKEALGFYLMGHP
LEPYREELRRMDLTPLAACAELGEGTPVRVALLVTGLKVITTKRGDRMAFAEVEDLSGSG
ELVLFSDVFAACREVLAAEEPMLVEAEVGRMETDENGQVTRVQLVARDMRLLRAAVAESA
QPVRVEVPLADAVDWAGLAQVFSRHAGPAPVVLEVVAPEFVCQLQCGPDVGVAAGPQFWR
DLESWRGGR
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgcatacctttgtccatctccattgccacacggaatacagcctgttggacggcgccatc
cgcttgcgcgacctttgcgcccgggccgtggactatggcatgggggctgccgccgtgacg
gatcacggcaatctttttgccgcactgcctttttacttggaagccaagaagcacggcatc
cggccgattatcggttgcgaggtgtacgtgacggaggacatgcgcgatcgcagcgacaaa
aagcgttttcatctggtgctgttggcgcaaaacctcgtgggctaccacaacctggtcaga
ttggtttccgcagggttcttggaggggttttactacaagccgcgtgtggacaaggagtgc
ctcaagcgccatgccgaggggctcattgccttgtcggcctgcatcaagggcgagatcccg
tggaccctcacccaggtaggcatggatgctggtctggaagtggcgcggcagtatgcggcc
attttcccggggcgtttgtatctggagctccaagaaaatggactcccggagcaggaggag
gccaatacccggcttctggaggccgcttccgccttggggctgccgctggtggccaccaat
gactgccattacctggaacgggaagacttcgaggcccatgacgctttgctgtgcatcggc
accggcaagaccgtggacacccccggccgactgcgcttttcgtccgatacgttttacttc
cgccccccggaggagatggaagcggcctttgcccacgtgcccgaggccttggaaaacgcc
gtccgcattgcggacctctgccaggtggagttcgatctcggccgccatcattttccggtc
tataccgcgccggaaggccgttccatggaggaggagttccagcgcctggcccgcgaggga
ctggaagcgcggttgcgccagctcccgtatgcggtggatccccaggaatatcgcgaccgc
ttggagcatgagctttctgtcatcacggaaaaaggtttcgccccgtattttctcattgtg
caggacttcatcaattgggccaaaagtcagggtattccggtgggcccaggtcgtggctcc
gcggccggctccctggtggcctacgccctgcgcatcaccgacctcgaccccatccgctac
cgcctctacttcgagcgttttctcaatgccgagcgggcctcgctgccggatatcgacgtg
gatttctgctacaaccgccgcgacgaggtcattcggtatgtgacggaaaaatacggcgcg
gaccgggtggcgcagatcgtggcctttggcaccatgaaggccaagggcgtggtgcgggat
gtggcccgggtgcttgggatcccgctcaaggacgccgaccgggtggcgaaactcatcccc
gatgacctcaagatgaccttggacaaggccctggagcaggagccggaactgcgggccctg
gtggaaaacgacccggtctttgccaagctcttccatatctcccgccgcctcgagggcctt
gcccggcacccgtcccagcatgcggcaggcatcgtcatctcccgcgaacccatggtggag
taccttcccctgcatgtgggcaagaacggcgaagtggtcacccagttcgacatgaagaaa
gtggagatggtggggctcatcaagttcgatttcttgggcctcaagaccctgaccgtgatc
cacgacgcgttgcgcctcatcgcccaggggggagggaccccgccggacctggagaccttg
cctctggacgatgcggccacctacgcgctcttgtgccggggcgagaccgacggcgtgttc
cagctggaatccgaaggtatgcgccgggtgctccgcagcctcaagccttcgtgcttcgag
gacatcatcgccttgctcgccctctaccgcccggggccgctggaaagcggcatggtggac
gacttcatcgaccgcaagcatggccgtaagcccatcgaatacgcctatcccgagctggcg
tcccgcctgcaccccatcctggaggacacctacggcgtgatcctctaccaggagcaggtc
atgaagatcgcctcggaactggccaactactccatgggcgagggcgacatcctgcgccgg
gccatgggtaagaagaaccccgaagaaatggccaagcagcgctcgcggtttctctccggc
gcccgggaaaacggcatcagcgaagaggccgcaggctggatcttcgacctcatggagaag
ttcgccggttacggcttcaacaaggcccatagcgccgcctacgcccttatttcctaccaa
acggcgtatctcaaagcgcattttccggcggagttcatggccgccaccattacttccgag
gtgtccaactccgacaaggtcctggcgcatatcaatgcctgccgcgacatggggctcacc
atcctgccgccggacgtgaaccagagccgctacgagttcactgtggaagcaggggcggtg
cgctacgggctctccgggatcaagggggtgggcgaggccgcagtgcagggcatggtggcg
gaacgggacgcccacggtccctttgccagcctgctggatttttgctgccgggtggatttg
cgcaaggccaacaaaaaggtgctcgaagccctcatcaaggccggggccatggacaccttt
ggctgccaccggggactgctgcttgcagccgtggagccggtcatggccatggcccagcgt
caggccaagcgcaagcgctccggccagctttcctttgcggccgtggtggatgcctccacg
tgccgcctgaccggcattggcgcggacgtccccatagaaggtgcggtccgcgtcccggat
gacgcggaaaagctgcgtatggaaaaggaggccttggggttttatctcatggggcacccc
ctggagccgtaccgggaggagctgcggcgcatggacctgacgccgctggctgcgtgcgcg
gagcttggggaaggcacgccggtgcgggtggcgctcctggtcacgggactcaaggtcatc
accaccaagcggggggaccgcatggcctttgccgaggtggaagacctttccggctccggc
gagttggtgcttttcagcgacgtctttgccgcgtgccgggaggtgctcgccgccgaggag
ccgatgctggtggaggcggaggtgggccgcatggagacggacgaaaacggccaggtgacg
cgtgtgcagctcgtcgcccgggacatgcggcttttgcgcgccgccgtggccgagagcgcg
cagccggtgcgggtggaagtccccttggcggacgccgtggactgggcggggctcgcccag
gtcttttcccgccacgcgggccctgccccggtggtcctcgaggtggtggccccggaattc
gtctgtcagctgcaatgcggcccagacgtgggtgtggcggcggggccccaattttggcgc
gatcttgagagctggcgaggagggcggtga
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