Thermodesulfomicrobium sp. WS: TDMWS_12220
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Entry
TDMWS_12220 CDS
T08730
Symbol
gcvPB
Name
(GenBank) glycine dehydrogenase (aminomethyl-transferring)
KO
K00283
glycine cleavage system P protein (glycine dehydrogenase) subunit 2 [EC:
1.4.4.2
]
Organism
thew
Thermodesulfomicrobium sp. WS
Pathway
thew00260
Glycine, serine and threonine metabolism
thew00630
Glyoxylate and dicarboxylate metabolism
thew00670
One carbon pool by folate
thew00785
Lipoic acid metabolism
thew01100
Metabolic pathways
thew01110
Biosynthesis of secondary metabolites
thew01200
Carbon metabolism
Module
thew_M00621
Glycine cleavage system
Brite
KEGG Orthology (KO) [BR:
thew00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00630 Glyoxylate and dicarboxylate metabolism
TDMWS_12220 (gcvPB)
09105 Amino acid metabolism
00260 Glycine, serine and threonine metabolism
TDMWS_12220 (gcvPB)
09108 Metabolism of cofactors and vitamins
00785 Lipoic acid metabolism
TDMWS_12220 (gcvPB)
00670 One carbon pool by folate
TDMWS_12220 (gcvPB)
Enzymes [BR:
thew01000
]
1. Oxidoreductases
1.4 Acting on the CH-NH2 group of donors
1.4.4 With a disulfide as acceptor
1.4.4.2 glycine dehydrogenase (aminomethyl-transferring)
TDMWS_12220 (gcvPB)
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Gene cluster
GFIT
Motif
Pfam:
GcvP2_C
GDC-P
Aminotran_5
Aminotran_1_2
Motif
Other DBs
NCBI-ProteinID:
BDV01137
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All DBs
Position
complement(1317304..1318791)
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AA seq
495 aa
AA seq
DB search
MKTVFAKSRPGRTGVWPPAPKTEPAALLDPSLLRDSAPALPELSELDTVRHFTELSRLNF
SVDGNFYPLGSCTMKYNPKFTEVAASHPGFTSLHPLVPQLRGAGHLTQGALEVLYETERF
LCAITGMHAFTLQPLAGAHGELTGVMLMAAYHRDKGNTKTKIIVPDSAHGTNPASAAIAG
YQVVSIPSHDGIIDPAELEKVLDDEVAGLMMTCPNTLGLFERNLPRIVELVHSVDGLLYY
DGANLNAIMGKMRVGDAGFDVVHVNLHKTFATPHGGGGPGAGPVGVSQRLEPYLPISRVV
KLDDGQYSLNYDYPKSIGYIAPFYGNFGVILKAYAYMLRLGREGIVRVSENAVLAANYLR
ARLRGHLEIPYDRTCMHEFVASAAELAASCGVRALDIAKALLDRGHYAPTIYFPLIVKEC
LMIEPTETESKETLDRFVDDLVDILRQARENPDALHAAPTRLPITRLDEVRAARAMELTD
DAGLAAHDPICPESA
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
gtgaagaccgttttcgccaaatcccgtcccggccgcactggggtctggccgccggctccc
aagaccgagcctgcggccctgctggatccttccctgctgcgcgacagcgccccagcgctg
ccggaactctcggaactggacacggtccgccatttcacggagctctcccggctgaatttc
agtgtggatggcaatttctaccccttggggtcgtgcaccatgaagtacaaccccaagttc
accgaagtggccgccagtcatccggggtttacctccttgcatcccctggtgccgcagctg
cgcggggccgggcacctcacccagggggcgctggaggtcctctacgagacggaacgcttc
ctctgcgccatcaccggcatgcacgccttcaccctgcagcccctggccggggcccacggg
gaactcaccggcgtcatgctcatggccgcctaccaccgcgacaaaggcaacaccaagacc
aagatcatcgtcccggactcggcccacggcaccaaccccgcttccgcggccattgccggc
tatcaggtggtgtccatcccttcccatgacggcatcatcgaccctgcggagctggagaag
gtcctggacgacgaagtggcggggctcatgatgacctgccccaataccctggggcttttc
gagcgcaatttgccgcgcatcgtggagctcgtccacagcgtggatggcctcctctactac
gacggcgccaacctcaacgccatcatgggcaagatgcgggtgggcgatgccggtttcgac
gtggtgcacgtgaacctccacaagaccttcgccactccccacggcggcggcggtccgggg
gccggcccggtgggggtcagccagcgtctcgagccgtatctgcccatctcgcgggtggtg
aagctcgacgacggccaatactccctcaactacgactaccccaaatccattggctacatc
gcgcccttctacggcaacttcggggtcatcctcaaagcctacgcctacatgctgcgtctg
ggccgcgagggaatcgttcgggtatcggaaaatgcggtgctggcggccaactatctccgc
gcccggttgcgggggcacctggaaattccttatgaccgcacctgtatgcacgaattcgtg
gcctcggcggcggagctggccgcctcctgtggggtgcgagccctggacatcgccaaggcg
ctgctcgaccgcggccactacgcgcctaccatctacttcccgctcatcgtcaaagaatgc
ctcatgatcgagcccaccgagaccgagagcaaggaaaccctggaccgcttcgtggacgac
ctggtggacatcctgcgccaagcccgggaaaacccggacgccctccacgcggcgcccacg
cggcttcccatcacgcgtcttgatgaggtgcgggccgcccgggccatggaactcaccgac
gatgcgggtctggcggcgcacgaccctatctgccccgaatccgcgtaa
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