Thermodesulfomicrobium sp. WS: TDMWS_12420
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Entry
TDMWS_12420 CDS
T08730
Symbol
sbcD
Name
(GenBank) nuclease SbcCD subunit D
KO
K03547
DNA repair protein SbcD/Mre11
Organism
thew
Thermodesulfomicrobium sp. WS
Brite
KEGG Orthology (KO) [BR:
thew00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
thew03400
]
TDMWS_12420 (sbcD)
DNA repair and recombination proteins [BR:
thew03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
TDMWS_12420 (sbcD)
Archaeal homologous recombinant proteins
TDMWS_12420 (sbcD)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SbcD_C
Metallophos
Metallophos_2
Motif
Other DBs
NCBI-ProteinID:
BDV01157
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All DBs
Position
1336903..1338102
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AA seq
399 aa
AA seq
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MALRILHTSDWHLGHRLYGRRRDAEHEAVLRWLLAMVRAHAVDVLMVCGDVFDTGAPSAA
AQEQYYGFLQELRQTGCRHAVILAGNHDSPSFLAAPKGLLRALGVHVITAPQPLVLMDPY
GRPELAVAAVPHLRERDVRTAMPGACLEDKAAAWVRGVAAVYAEVMRSVRSMAPQTPAVA
LGHLFVAGSQVADGQGMRFAVGGVDRVPVEVFPACTYVALGHVHGAQEVAGRAHVRYSGA
PLALGFADAGKAKSATLVTVEGEGRMTCELLAAPAPQSMVRLCGPLAQVEADLRRLVEVG
GSVWVEVEVTSPEPADTVRRRIEAAVSGSAVDVLCVRVPRSPSLALGAAGERLEELSPEE
VFRRLLDAHAVEEGLRPQLTAAFAELMDTVLQCGDQHAP
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atggccctgcgcattctccatacttcggattggcacttagggcaccggctctatggccgc
cgccgcgatgccgagcacgaggccgtgctgcgctggctccttgccatggtgcgcgcgcac
gcagtggacgtgctcatggtgtgcggggacgtcttcgataccggcgcccccagcgctgcg
gcccaggagcagtactacggatttctccaggaactgcggcaaacaggctgccgccatgcg
gtgatcctcgcaggcaaccacgactcgccgtcttttttggccgcacccaagggccttttg
cgtgccttgggggtgcatgtgatcaccgcgccgcagccgctggttttgatggatccttac
ggtcggccggagttggcggtggcagcggtgccccatttgcgggagcgcgatgtgcgcacg
gccatgcccggggcgtgtttggaggacaaggccgctgcctgggtgcgtggagtggcggcg
gtatacgccgaggtcatgcgctcggtccggtccatggccccccagaccccggccgtggcc
ttgggccacctgttcgtggcaggcagccaggtggccgacggccaaggcatgcgttttgcc
gtgggaggcgtggaccgggtaccggtggaggtctttcctgcctgcacctatgtggccttg
gggcatgtgcacggcgctcaagaggtggcgggccgtgcccacgtgcgctatagcggcgcc
ccgcttgccttgggttttgccgacgccggcaaggccaagtccgccaccttggtgacggtg
gaaggcgagggcaggatgacgtgcgagctcttggccgcgcctgcgccgcagtccatggtg
cgtctgtgcggcccgttggcgcaggtggaggcggatttgcggcgtttagtggaggtcggc
gggagtgtgtgggtggaggttgaggtcacaagtccagagcctgccgataccgtgcgccgc
cgcatcgaggcggcggtttctggaagcgcggtggacgtcttgtgcgtgcgggtcccccgg
tcgccctccttggccttgggcgctgccggggagcgtttggaggagctttcgcccgaggag
gtcttccgccgccttttggacgcccatgcggtggaggagggcctgcgtccgcagctgacc
gcggcctttgccgagctcatggataccgtgctccagtgcggggaccagcatgcgccttga
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