Thermodesulfomicrobium sp. WS: TDMWS_19820
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Entry
TDMWS_19820 CDS
T08730
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
thew
Thermodesulfomicrobium sp. WS
Pathway
thew03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thew00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TDMWS_19820 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thew03019
]
TDMWS_19820 (rny)
Messenger RNA biogenesis [BR:
thew03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
TDMWS_19820 (rny)
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Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH_2
PsaN
Motif
Other DBs
NCBI-ProteinID:
BDV01897
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Position
complement(2138014..2139567)
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AA seq
517 aa
AA seq
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MGEIMTALVWIAIGAAGGFFLKKYLLEQEMDGAQQMAARILDEAKKEALAQKKEILVQAE
AEALARKKEAEQDVKDRERELKKNESRLQAKEERLEQKVEQLAQRESELGMLEKKLVKQE
KELEAKEQRLCELVAEQQRKLEEISGLTAEEAKNRFMQEVESKARHEAARMIRQIEMEAQ
ETAHRKAQMIIATAVQRYASDYVAEHTVSAVELPSEDMKGRIIGREGRNIRALEAATGVD
LIIDDTPETVVLSAFSPLRREIAKRSLERLISDGRIHPARIEEIVKKVEKEMEVQVREIG
EQATFDLGVHGIHPELVKLLGQLRFRTSFTQNVLQHSLEVGFLCGIMAAELGMDVKKARR
AGLLHDIGKAVDHEVEGPHAVIGADLAKKYNEPGDVIHAIAAHHEDVPPKSVLAVLVQAA
DALSGARPGARKELLESYVKRLEELEGIAMSFAGVTRAYAIQAGREVRVMVDCDQVNDDG
VFLLSKDIAKQIEEKMTYPGQIRVTVIREKRAVGVAK
NT seq
1554 nt
NT seq
+upstream
nt +downstream
nt
atgggtgaaataatgaccgccctggtgtggatcgccatcggtgcggctggtggctttttc
ttgaagaagtatcttctggagcaggagatggacggcgcgcagcagatggccgcgcgtatt
ttggatgaggcaaaaaaagaggcgcttgcccagaaaaaggagattcttgtccaggcggaa
gcagaagccttggcgcgcaagaaagaggcggagcaggatgtcaaggaccgcgagcgggag
ctcaagaagaacgaatcccgcctgcaggccaaagaagagcgcctggagcagaaggtcgag
caattggcccagcgggaaagcgagctgggtatgctggagaaaaagctcgtcaagcaggag
aaggagctggaggccaaggaacagcgcctctgcgaattggtggccgagcagcagcggaaa
ttggaggaaatcagcggcctgacggccgaggaggccaaaaatcgcttcatgcaggaagtg
gagagcaaggcccggcacgaagcggcgcgcatgatccgccagatcgagatggaggcgcag
gagacggcgcaccgcaaggcgcagatgatcatcgctacagcagtgcagcgctatgccagc
gactatgtggccgagcacacggtgagcgccgtggagcttcccagcgaggacatgaaaggc
cgcatcatcggccgtgaaggccgcaatatccgcgccttggaagccgccacgggcgtggac
ctcatcatcgacgacaccccggagaccgtagtgctctccgccttcagccccttgcgccgg
gagatcgccaagcgctctttggagcgcctcatcagtgacggccgcatccatccggcgcgc
atcgaggagatcgtgaagaaggtggagaaggagatggaagtgcaggtgcgcgagatcggc
gagcaggccaccttcgatcttggcgtgcacggcattcatccagagttggtgaagctcttg
gggcaactgcgctttcgcaccagctttacccagaacgtgctccagcattccctcgaggtg
ggcttcctctgcggcatcatggcggcggagctgggcatggacgtgaaaaaggcccggcga
gccggcttgctccatgacatcggcaaggccgtggaccacgaggtggaaggcccgcacgcg
gtcattggtgcagacctggcaaaaaaatacaacgagcccggggatgtcatccatgccatc
gccgcccatcatgaggacgttccccccaagagcgtcctggcggtattggtgcaggcggcg
gatgccctctccggcgcccggcccggggcccgcaaggaacttttggagagctacgtcaag
cgcctggaggagctcgaaggcattgcgatgagttttgcgggcgtcacccgcgcctacgcc
attcaggccggccgggaagtgcgggtcatggtggactgcgaccaggtgaacgacgatggc
gtgtttttgctgagcaaagacattgccaagcaaatcgaagaaaagatgacgtatccgggc
cagatccgggtgacggtcatccgggagaaacgcgccgtgggcgtggccaaataa
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