Thermodesulfomicrobium sp. WS: TDMWS_21140
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Entry
TDMWS_21140 CDS
T08730
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
thew
Thermodesulfomicrobium sp. WS
Pathway
thew03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thew00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TDMWS_21140 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thew03019
]
TDMWS_21140 (rnr)
03016 Transfer RNA biogenesis [BR:
thew03016
]
TDMWS_21140 (rnr)
Enzymes [BR:
thew01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
TDMWS_21140 (rnr)
Messenger RNA biogenesis [BR:
thew03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
TDMWS_21140 (rnr)
Transfer RNA biogenesis [BR:
thew03016
]
Prokaryotic type
tRNA degradation factors
TDMWS_21140 (rnr)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
RNase_II_C_S1
S1
Motif
Other DBs
NCBI-ProteinID:
BDV02029
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All DBs
Position
2264978..2267155
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AA seq
725 aa
AA seq
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MTLKLTKTTLLAWIKEQKTPVRRRHMAEFFTAGLTGKAAAARKDLLRTLLAQLTEEGLVV
PVGRSFMAAETLPSFAAVLEIRRSGHGVVRHPEEGTIPIMPEDLGDAWPGDLVEVILLAE
RRELRGRVRRVMERRQTQVPLVLEREISPGLWLARPTDPRMPLVAHVRTAQLSAAAGDMV
LGEDPTPLGPRLWRFDAASVLGAEARLSTQEAMVKLVHAIPQSWPEAVLTEAAALPEDPS
DWEGRTDLRGLSLVTIDDERARDFDDAIFVEETANGFRLVVAIADVAHCVRPGSALDTEA
QERGNSYYFPLSVEPMLPERLSNGLCSLRPGVQRLAMAVDLTISRDGELIAAHPLEAVIQ
SAARLTYTAVQRFVDGEEGAVPPQLHTMLSAAARLTQALWHQRLSRGTLDLDIPEAVIRE
AEDGTVTVASRPRLFAHRIVEECMIAANEAVARMLEDHHRVFPYRIHPAPDPAKLEALFT
HLVGSGIIAEVPRTLDLRALQNLLAAVRDTPHEDLVHRLVLRSLMQAAYAPTNEGHFGLA
SVAYCHFTSPIRRYADLLTHRALKALIHNRPDPFAVESLARQCEALGGCERRATEAERDM
AKRAAILALQGREGEVFDAVVSGVAEFGFWVELAGIPVDGMVRLATLSEFWSFDATRHEL
LGTRSGRRIGLGERVQVALVEANLARAELNFTLAHEGSRAASSRPRPQSPKAPLPKRKTL
RRRRR
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
gtgaccttgaaactgaccaaaacgacgcttcttgcctggatcaaagaacaaaaaacaccg
gtacggcgccgccacatggcggaattcttcaccgccggcctgaccggcaaggccgcagcc
gcgcgcaaggaccttttgcgcaccctgcttgcccagttgaccgaagaaggattggtggtg
cctgtgggccgaagcttcatggctgccgaaaccttgccgagctttgcggcggtcctggag
atccgccgcagcggccacggcgtggtccgccaccccgaagaagggaccatccccatcatg
cctgaagacttgggcgacgcctggcccggggacctggtggaggtgatcctgcttgccgag
cgccgggagctgcgcggccgggtgcgccgggtcatggagcggcggcaaacccaggtcccc
ctggtgctggagcgggagatctcccccggcctgtggcttgcccggcccaccgacccgcgc
atgcccttggtggcccatgtgcgcaccgcgcaactgtccgccgctgccggcgacatggtc
ctgggcgaggatcccacccctttgggcccgcggctgtggcgctttgacgccgccagcgtg
ctcggcgccgaagcgcggctttccacccaagaggccatggtgaagctcgtgcacgccatc
ccgcagtcctggcccgaagcagtcctcaccgaggccgcggccttgcccgaagaccccagc
gactgggagggccgcaccgatctgcgcgggctttccctggtcaccatcgacgacgagcgc
gcccgggatttcgatgacgccatcttcgtggaagaaaccgcaaacggcttccgtctggtg
gtggccatcgccgacgtggcccactgcgtgcgccccggctccgccctggacaccgaggcg
caagagcgcggcaattcctactattttcccctgtccgtggaacccatgctgcccgagcgc
ctctctaacgggttgtgctccttgcggccaggagtgcagcgtctggccatggccgtggac
ctcaccatcagtcgcgacggcgaactcatcgccgcgcacccgctggaggcagtcatccag
agtgcagcccgactcacgtacacggcggtgcagcgcttcgtggacggcgaggaaggcgcc
gtgccaccccagctccacaccatgctctccgcagccgcccgcctcacccaggccctctgg
caccagcgcctctcccgcggcaccctggacctggacatcccggaggcggtcatccgcgaa
gccgaggacggcaccgtcaccgtggccagccggccccggctctttgcccaccgcatcgtg
gaagagtgcatgatcgccgccaacgaggccgtggcccgcatgctcgaagaccaccaccgc
gtctttccctaccgcatccaccccgccccggacccggccaagctggaggccctcttcacc
cacctggtgggaagcggcatcattgccgaggtcccgcgcaccctcgacctgcgcgccctg
caaaatctcctcgccgccgtgcgcgacaccccgcacgaagacctggtacaccgactggtc
ttgcgttccctcatgcaggccgcctacgctcccaccaacgaaggccacttcggcctggcc
tcggtcgcctattgccacttcacctcccccatccgccgctacgccgacctcttgacccac
cgcgctctcaaggccctcatccacaatagacccgacccctttgccgtggagagtctggcg
cgccaatgcgaggccctgggcggatgtgagcgccgcgccaccgaggcagagcgggacatg
gctaagcgcgccgccatcttggccttgcaggggcgcgaaggcgaagtcttcgatgccgtg
gtctccggtgtggccgaattcggcttttgggtagagctggcgggcatccctgtggacggc
atggtgcgcctggcaaccctctcggaattctggagcttcgatgcaacgcgccacgagctc
ctcggcacccgctcgggccgacgcatcgggctgggagagcgcgttcaggtggccttggtg
gaggcaaacctcgcccgggcagagctcaacttcaccctggcccacgaagggtctcgcgcg
gcgtcctcgcgcccaaggccccaaagccccaaggccccgctcccgaaacgcaaaactctc
cgacgccgccggcgctaa
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