Thermomonas sp. XSG: ICG51_002616
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Entry
ICG51_002616 CDS
T10183
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
thex Thermomonas sp. XSG
Brite
KEGG Orthology (KO) [BR:
thex00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
thex03009
]
ICG51_002616 (rlmD)
Enzymes [BR:
thex01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
ICG51_002616 (rlmD)
Ribosome biogenesis [BR:
thex03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
ICG51_002616 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
PCMT
MTS
TRM5-TYW2_MTfase
TRAM
UPF0020
RrnaAD
Methyltransf_4
Methyltransf_12
Methyltr_RsmB-F
Ubie_methyltran
Methyltransf_23
CMAS
FtsJ
Cons_hypoth95
Motif
Other DBs
NCBI-ProteinID:
QNU16170
UniProt:
A0A7H1RPI1
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All DBs
Position
2793006..2794472
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AA seq
488 aa
AA seq
DB search
MRASGTAAAKRQGYRLHRLPPYGPAAAVCDNNRLSTSLRAVARLDQTPKTLDVLHLTHDG
RGVARWPEGHSQAGKAVFVAGALPGETVSVQQTARSKHFDEAKTLEVLAASPDRVTPRCP
HFGVCAGCVLQHLSEDRQIEAKQQVLLDNLQRIGHVAPAAVLPPLRGEAWGYRRKGRLSV
RRVEKKDKTLVGFRETDPRFVADLRECHTVIPQLGFKLDALGALVDGMDARRDIPQIEFI
AGDAAIALVFRHLQPLSEADRAKLAAFGQAHGFAIFLQPGGNDSVHPLGGEAPQLSFRLP
QWDVELLFRPLDFIQVNAKLNEAMIARALDLLDVQPGERVLDLFCGLGNFTLPLARASGD
GAVIGVEGDAGLVARARLNAEHNGMGNVQFFAADLAQDLAGQPWLKQGFDKLLLDPARAG
AIEVLKQLPLKGLKKIVYVSCHPGSLARDAGWLVNEAGWTLREAGVMDMFPHTAHVESIA
VFDPPKKN
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgcgggcgtccggtacggcggcggcaaaacgccaaggataccgcctgcaccggctgccc
ccgtacgggccggctgccgcagtctgcgacaataaccggctatccacctccttacgcgcc
gtggcccgcctcgaccagacccccaagaccctcgacgtcctccatctcacccacgatggg
cgtggcgtcgcccgctggccggagggccactcgcaggccggcaaggccgtgttcgttgcc
ggtgcgctgccgggtgaaaccgtctccgtgcagcagaccgcgcgctccaagcacttcgac
gaggcgaagacgttggaagtgctcgccgcatcgccggaccgcgtgacgccgcgctgcccg
catttcggcgtctgcgccggctgcgtgctgcagcatttgtccgaagaccggcagatcgaa
gccaagcagcaggtgctgctggacaacctgcagcgcatcggccacgtggcgccggccgcg
gtgctgccgccgctgcgtggggaggcctggggctatcggcgcaagggccgcttgtcggtg
cggcgggtggaaaagaaggacaagacgctggtgggcttccgcgaaaccgacccgcgtttc
gtcgccgacctgcgcgaatgccataccgtcattccgcagctgggcttcaagctggacgcg
ctgggcgcgctggtggacggcatggacgcgcgccgcgacatcccgcagatcgaattcatc
gccggcgatgccgccatcgcgctggtgttccggcacctgcagccgttgtccgaggcggac
cgggcgaagcttgccgcgttcgggcaggcgcatgggttcgccatcttcctgcaaccaggc
ggcaacgattccgtgcatccgctcggcggcgaggcgccgcagctgtcgttccggctgccg
cagtgggacgtggaactgctgttccgcccgctcgatttcatccaagtcaatgccaagttg
aacgaggcgatgatcgcccgcgcgctggacctgctggacgtgcagccgggcgagcgcgtg
ctggacctgttctgcgggctgggcaacttcaccctgccgctggcgcgcgcgtccggcgac
ggcgcggtgatcggggtggagggggacgccgggctggtggcgcgggcgcgtttgaatgcc
gaacacaacggcatgggcaacgtgcagttcttcgccgccgacctggcccaggacctggcc
ggacagccgtggctgaagcagggctttgacaagctgctgctggacccggcccgcgccggt
gcgatcgaggtgctcaagcagctgccgctgaagggcctgaagaagatcgtctacgtcagc
tgccaccccggctcgctggcgcgcgacgccggctggctggtcaacgaggccggctggacg
ctgcgagaagcgggggtgatggacatgttcccgcacaccgcgcacgtggaatccatcgcg
gtgttcgatccgccgaagaagaactga
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