Thermosynechococcus sp. TA-1: JW907_02085
Help
Entry
JW907_02085 CDS
T10117
Name
(GenBank) VacB/RNase II family 3'-5' exoribonuclease
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
they Thermosynechococcus sp. TA-1
Brite
KEGG Orthology (KO) [BR:
they00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
they03016
]
JW907_02085
Enzymes [BR:
they01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
JW907_02085
Transfer RNA biogenesis [BR:
they03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
JW907_02085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD_RNase_II
HTH_RNase_II
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
QSF49593
LinkDB
All DBs
Position
456635..458671
Genome browser
AA seq
678 aa
AA seq
DB search
MEKGTLIEFRVNNQRRLAVIDRPEGKKHWIAIDQHLQAHTIHPRQLTFTVPEERFRPQEI
PTFWQQVQPLLDADSLEVAWEIIREENRAITPADLAELLFSERSAVACYAAYYLLSEDRF
YFKLKGETYEPRPAAQVAELKHQSEREAQRLAEEVSFREHLTQALKGEAVAWSASDRKRL
EQLERYAIAIEPSPQHQAAIDLLSELQRPTQPLGAFQLLVDLGLWSEHENLFLRRSQIDV
EFSAKVLAVAHERLTSPPTDIDAPLRRDLTHLKVYTIDDESTQEIDDGLSLEVVGDRQKL
WIHIADPTRWVMVDDVLDQEARRRATTVYLPTGMIPMFPTELATGPMSLVAGQTCCALSF
GILLADNGEVLEYEICPSWIRPTYRLSYDDVDMILEQGVTGEADLLAIAQWGQRRSEWRQ
QRGAIRINIPEPNIKVAGEEVEISPLHDSPARQLVAEMMILAGEVAAHFGAREGIPLPFR
SQSPPELPPEEELLQLPAGMVRDCAIRRCMPRSEMSTQPNPHASLGLDAYCQVTSPIRRY
TDLLAHRQIKAHLRGERPPLTPEQLNEILLGLMSSVQESALVERQTNRYWCLEYLRRHRE
EVWRGIVLRWLRPEEGLGLVLLEDLGLELAMRFQRQAKLGESVLVRVSRVDPRGDQIWLE
EVPPDALTSTETVALSST
NT seq
2037 nt
NT seq
+upstream
nt +downstream
nt
gtggagaaaggcaccctcattgaatttcgggtcaataaccagcgtcgcttggcggtgatc
gatcgccccgaaggtaaaaagcattggattgccattgatcagcatttacaagcccacacc
attcatccgcgccaactgacctttacggtgcccgaggagcggtttcgtccccaagagatt
cccacattttggcagcaggtgcagccgctcttggatgccgacagtctagaagtggcttgg
gaaattatccgcgaggaaaaccgcgccattacgccagcggatctagcggagctgcttttt
tcggagcgatcggcggtggcctgctatgcggcctactatctccttagcgaggatcgtttc
tacttcaagctcaagggggaaacctacgagcctcgaccggctgcccaagtggcagaactc
aaacatcaaagcgagcgggaagcccaacgcttggcggaggaagttagcttccgtgaacat
ttgacccaagccctgaagggcgaagccgtggcgtggtctgccagcgatcgcaagcgcctc
gagcagttagaacgttatgctatagccattgaacccagtccccaacaccaagcggcgatt
gatctgctcagtgaattgcagcgtcccacccaacccttgggcgctttccaactgttggtg
gatctcggcctctggtcagagcacgaaaatctgttcctgcgccggagtcaaattgacgtt
gaattctctgccaaggtacttgctgtggcccatgaacgcctcacctcaccccctacagat
attgacgctcccctgcgccgcgatctcacccatctcaaggtctataccatcgacgacgaa
agcacccaagaaattgacgatggcctcagcctcgaagtcgtgggcgatcgccaaaagctg
tggattcacattgccgatcccacccgctgggtgatggtggatgatgtcttggatcaggag
gctcgccgccgcgccacaacggtctatctaccgacggggatgattcccatgtttcccaca
gagttggccacaggaccgatgagtttggtcgcgggacaaacctgttgtgcgctgagtttt
ggcattcttttagccgacaacggcgaagtgctggagtacgaaatttgccccagttggatt
cgccccacctatcgcctgagctatgacgatgtggacatgattttggagcagggggtgacc
ggggaagcggatctgctggcgatcgcccaatggggacagcggcgtagtgagtggcgacaa
caacggggagcgattcgcattaatatccctgaacccaacattaaagtggctggtgaagag
gtggaaatctcgcccctccatgactcccccgcccgccaactggtggcagaaatgatgatt
cttgccggtgaagtagccgcccattttggcgcccgtgagggcatccctctgccctttcgc
agtcaatcaccgccagaactgcccccagaggaggaattgttgcaactgcccgctggaatg
gtgcgggactgtgccattcgtcgctgtatgccccgcagtgaaatgagtacccaacccaat
ccccacgccagtctgggtcttgatgcctactgccaagtgacctccccgattcgtcgctac
acggatctgctggcacaccgtcagattaaagcccacctgcggggagaaaggccgcccctg
acaccagaacaactcaatgaaattttattgggactgatgtcttcggttcaggagtccgct
ttggtggagcggcagaccaatcgttattggtgcctagagtacttgcggcggcatcgcgaa
gaggtgtggcggggcattgtgctgcgttggttgcgtccggaagagggactggggctagta
ctgctggaggatttggggctagaactggccatgcgctttcaacggcaggcaaagttggga
gaatcggtactggtgcgggtgagtcgggttgatccgcgaggcgatcaaatttggctggag
gaagtgcccccagatgcactgacctcaacagaaacggtcgctttatcttcaacatga
DBGET
integrated database retrieval system
