Thermosynechococcus sp. TA-1: JW907_02650
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Entry
JW907_02650 CDS
T10117
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
they Thermosynechococcus sp. TA-1
Pathway
they03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
they00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
JW907_02650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
they03400
]
JW907_02650
Enzymes [BR:
they01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
JW907_02650
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
JW907_02650
DNA repair and recombination proteins [BR:
they03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
JW907_02650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_ribbon_6
Zn_ribbon_8
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
QSF49692
LinkDB
All DBs
Position
584158..585012
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AA seq
284 aa
AA seq
DB search
MPELPEVETVRRGLEVVTLGQPIVGVEVLLARSIALPEEPQAFIDHLRDRALQQWQRRGK
YLLATLDDGSHLVIHLRMSGQLLWLTDPVPLCSHTRVRWFFATGAELRFVDQRTFGRCWW
IPAHCRPETAIPTLASLAPEPLSEAFTVWFLAERLVHYRRALKTALLDQTVVAGMGNIYA
DESLFLSGLHPALPTYTLTIEQIVHLHQVIRQVLREAIAAGGTTIRSFVTPAGVNGRYGG
QAWVYGRKGEACRVCGTTIERLRLAGRSSHYCPRCQPLSSAMGK
NT seq
855 nt
NT seq
+upstream
nt +downstream
nt
gtgccggaattaccggaagttgaaaccgtacgtcgtgggctagaggtggtcacccttggg
caacccattgtgggggtggaggtgcttctagcccgttctattgcgcttcctgaagagccg
caagcgtttattgatcacctgcgcgatcgcgccctgcaacaatggcaacggcgcggcaag
tatcttttagccaccctagatgacggcagccacctcgtcattcatctgcgcatgagtggt
cagttactgtggctcactgatccggtgcccctttgttcccatacccgtgtacgctggttt
ttcgcaacgggggcggaactccgctttgtggatcaacggacgtttggtcgctgttggtgg
attcctgcacactgccgccccgagacggcgattcccacactggccagcttggcaccagaa
cccctgagtgaggcctttacagtttggttcttggcggagcggttggtgcattatcgtcgc
gcgctaaaaacggcacttttggatcaaaccgttgttgccggcatggggaatatctatgcc
gatgaaagtcttttcttgagtggtctgcaccccgccctacccacctacaccctaacgatt
gagcagatcgttcacctccatcaggtgattcgccaagtgctgagggaagcgattgcagca
ggcggtacgacaattcgtagcttcgtcactccggcgggggtgaatggtcgctatgggggt
caagcatgggtctatggtcgcaagggggaagcctgccgcgtctgtggcacaacgattgaa
cggctgcgcttggcaggacgctccagccactattgtccccgctgtcagccgctgtcttca
gcaatgggcaaataa
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