KEGG   Thermoanaerobacter sp. RKWS2: OEI98_001368
Entry
OEI98_001368      CDS       T10300                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
thez  Thermoanaerobacter sp. RKWS2
Pathway
thez02024  Quorum sensing
thez03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:thez00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    OEI98_001368 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    OEI98_001368 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:thez03019]
    OEI98_001368 (hfq)
   03036 Chromosome and associated proteins [BR:thez03036]
    OEI98_001368 (hfq)
Messenger RNA biogenesis [BR:thez03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     OEI98_001368 (hfq)
Chromosome and associated proteins [BR:thez03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    OEI98_001368 (hfq)
SSDB
Motif
Pfam: Hfq Hfq_1 LSM
Other DBs
NCBI-ProteinID: UZQ84170
LinkDB
Position
1322990..1323250
AA seq 86 aa
MASSKAAINLQDIFLNQVRKEHVPVTVYLINGFQLKGLVKGFDNFTVVLESENKQQLLIY
KHAISTITPQKPVIFSASDKDEKKEE
NT seq 261 nt   +upstreamnt  +downstreamnt
atggcaagttcaaaagcagctattaatttacaggatatctttttaaatcaagtgagaaaa
gagcatgtaccagtaactgtctacttaatcaatggattccaattaaagggtttagtgaaa
ggatttgataattttacggtggtgttggagtcagagaacaaacagcaacttcttatctac
aagcatgctatttcgacaattacaccccaaaagcctgtaatcttctctgcttctgataag
gatgagaagaaagaagagtaa

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