Thermoanaerobacter sp. RKWS2: OEI98_002383
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Entry
OEI98_002383 CDS
T10300
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
thez Thermoanaerobacter sp. RKWS2
Pathway
thez03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
thez00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
OEI98_002383 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
thez03400
]
OEI98_002383 (ligD)
Enzymes [BR:
thez01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
OEI98_002383 (ligD)
DNA repair and recombination proteins [BR:
thez03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
OEI98_002383 (ligD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
UZQ82518
LinkDB
All DBs
Position
2264015..2264938
Genome browser
AA seq
307 aa
AA seq
DB search
MSMIEEKISPMLASSSDPFDSPEWIYEVKWDGSRTIAFISNKTRLQDRRLVDITHQFPDL
ALLHKQIKAKEAILDGELVVLKNGKPSYKSIMSRKHQQNLVKINLLSKIMPVIFITWDIL
YLNGKSLVELPLIERKDILRKTVKENEIIKISDFIFEHGKMLFEETGKKGLEGIVAKKAD
SKYLIGKRSKLWLKSKHFIVINAVIIGYRTDKTALILGLYDEENNLINIGSCESGLSQKE
LKAFYEVAKEIKAPDNYYNFKEKNVQWLKPLLTCKVRFMEWSENMKMRAPSFIQFEYNVK
PEECRFE
NT seq
924 nt
NT seq
+upstream
nt +downstream
nt
atgtctatgatagaagaaaaaatatcacctatgctggcatccagcagtgacccttttgat
agccccgaatggatatatgaagtcaaatgggatggttcaaggactattgcttttatttca
aataaaacaagacttcaagatagaaggcttgttgatataacccatcagtttccagattta
gcattacttcataagcaaataaaagcaaaagaagcaatacttgacggtgaacttgtagtt
ttaaaaaacggcaagcccagttacaaaagcattatgtcgagaaagcatcaacaaaattta
gtaaaaataaatcttttaagcaagataatgcccgtaattttcataacatgggatatatta
tatttaaacggcaaatctcttgtagaattgccacttatagagagaaaagatatccttaga
aaaacagttaaagaaaacgagatcataaaaatatcagattttatatttgaacatggaaaa
atgctttttgaagagacagggaaaaaaggacttgaaggaattgttgccaaaaaagcagat
tcaaaatatttaataggaaaaaggagtaaactctggcttaagtcaaaacattttattgta
ataaatgctgttattatagggtacagaactgacaaaacagccctcatactggggctttac
gatgaggaaaataatttaataaacataggaagttgtgaatcaggcctatcccagaaggaa
ttaaaagcattctatgaagttgccaaggagataaaagccccagataattattataacttt
aaagaaaaaaatgtgcagtggttaaaacccttgctaacatgtaaagtgagatttatggaa
tggtctgaaaacatgaagatgagggcaccttcttttattcaatttgagtataacgtaaaa
ccagaagagtgcaggtttgaataa
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