Thermoanaerobacter sp. RKWS2: OEI98_002478
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Entry
OEI98_002478 CDS
T10300
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
thez Thermoanaerobacter sp. RKWS2
Pathway
thez03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
thez00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OEI98_002478 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
thez03021
]
OEI98_002478 (rpoC)
03400 DNA repair and recombination proteins [BR:
thez03400
]
OEI98_002478 (rpoC)
Enzymes [BR:
thez01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OEI98_002478 (rpoC)
Transcription machinery [BR:
thez03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OEI98_002478 (rpoC)
DNA repair and recombination proteins [BR:
thez03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OEI98_002478 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
DUF5605
Motif
Other DBs
NCBI-ProteinID:
UZQ82586
LinkDB
All DBs
Position
complement(2331275..2334829)
Genome browser
AA seq
1184 aa
AA seq
DB search
MFQLRNFEAIKIGLASPEKIREWSRGEVKKPETINYRTLKPERDGLFCERIFGPTKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRSKVRRERMGHIELAAPVAHIWYVKGIPSRMGLLLDM
SPRALEKVLYFVSYVVIDPGDTPLTKKQLLSEKEYRDYLDKYGNRFRAGMGAEAIKELLQ
EIDLEKLSKELRAEIRESTGQKRVRAIRRLEVVQAFIDSGNRPEWMILDVIPVIPPDLRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKKLLDLGAPDIIVRNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKVYQCGLPKE
MALELFKPFVMKKLVDEGLAQHIKSAKRMVEKVKPEVWDVLEEVIKEHPVLLNRAPTLHR
LGIQAFEPVLVEGRAIKLHPLVCTAYNADFDGDQMAVHVPLSMEAQAEARFLMLAANNIL
KPQDGKPVMTPTQDMVLGCYYLTADEEGVPGEGKYFSSPEEAIMAYQLGYIHIHAKIKVK
MTKEIDGVKKSKIIETTVGKIIFNEAIPQDLGYVDRTNPETAFDLEINDLVDKSKLGKIL
DRVYRLHGPTKTAETLDKIKELGFRYSTKAAITVSVSDMVIPKEKEKLLKEADEMVSKIE
SQFRRGLISEEERYESVIRTWNMTTEKVTEALMASLDKFNPIFMMAHSGARGSKNQIRQL
AGMRGLMADPSGRIIELPIRSNFREGLNVLEFFISTHGARKGLADTALRTADSGYLTRRL
VDVSQDVIVREDDCGTDEGIYVEEIREGNEIIEKLADRIIGRVAAEDVVDNEGNIIVRRN
ELINEEEAEKIEKAGITKVKIRSLLTCKSRHGVCRMCYGRDLATGELVNIGEAVGIIAAQ
AIGEPGTQLTMRTFHTGGVAGADITQGLPRVEELFEARKPKGLAVISEISGVVRINESKK
RREVIVTDEENNISKTYLIPYGSRLKVHDGQVIQAGDELTEGSVNPHDLLKIKGIFAVQT
YLLQEVQKVYRLQGVEINDKHIEVIIRQMMRKVKVEDPGDTSMLPGELIDMFKFEDENKK
AIEKGLRPATGRRALLGITKAALATDSFLSAASFQETTRVLTDAAIKGKVDPLLGLKENV
IIGKLIPAGTGLSRYRNISVVKKVNDQQERQDKEKEETEVKASN
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
ttgtttcagttaagaaattttgaggctattaaaattgggttagcatcacctgaaaaaata
agagaatggtcaagaggtgaggtgaaaaaacctgaaactatcaattatagaacgttaaaa
ccagaaagggatggccttttttgtgaaagaatttttggacctacaaaagactgggaatgc
cattgcggtaaatacaagagagtgagatacaaaggtgtagtttgtgatagatgtggagtt
gaagttacaaggtccaaagttagaagggaaagaatggggcacattgaacttgctgcccct
gttgcacatatatggtatgtaaaggggattccaagtcgaatggggcttcttcttgatatg
tctccaagagcattggaaaaagtgctgtactttgtatcatatgtggttattgaccccggc
gatactcctcttactaaaaagcaattattatcagaaaaagaatatagggattaccttgat
aaatatggcaacagatttagagcagggatgggagccgaagctataaaagaattgttacaa
gaaatagatttagaaaaattgagcaaagaattgagagctgaaatacgtgaatctactggc
caaaaaagggtaagagcaattagaaggttagaagtagtgcaagcttttatagattccggc
aatcgccctgaatggatgattttagatgttatacctgtaattccgcctgatttaagacct
atggtgcagttggatggtgggcgctttgcaacttcagaccttaatgatttgtataggaga
gtaatcaatagaaataacagattgaaaaagcttttagacttaggggctccagatattata
gtaagaaatgaaaaaagaatgctacaagaagcagtagatgctttgatagacaatggcaga
agaggtagacctgttacaggcccaggcaaccgacctttaaaatccctttctgatatgcta
aaaggtaagcaaggaagattcagacaaaatcttttaggtaaaagggtagattattcaggt
cgttccgttatagtagtggggccggagcttaaagtttatcaatgtggtttgccaaaagaa
atggcattagagctttttaagccttttgtaatgaagaaattagtagatgagggtttggcg
cagcatataaaaagtgctaagagaatggttgaaaaggtaaagcctgaggtatgggatgta
ttagaggaagttattaaagaacatcctgtgttactaaacagagcacctacacttcataga
ttgggtattcaagcttttgaaccggtgttagttgaaggaagagctataaagcttcatcct
cttgtgtgtacggcttacaatgcagactttgatggtgaccagatggctgtccacgtacct
ctttcaatggaagcacaagctgaagcgcgatttttaatgctggctgctaataacatactc
aagccccaagatggaaagcctgttatgactcctactcaagatatggtattaggttgttat
tacttaacagcagatgaagagggagttccaggtgagggcaaatatttctccagccctgaa
gaagctattatggcatatcaactgggatacattcacatccatgctaagataaaagtgaag
atgacaaaagaaattgatggagtcaaaaaatcaaaaataattgagacaacagttggaaaa
attatatttaatgaagcaattccacaggatttaggttatgtagatagaactaatcctgaa
actgcttttgacttagaaattaatgatttagtagataaatctaaattggggaaaatttta
gatagagtatacagattacacgggccaacaaagacagcagaaactcttgataaaatcaaa
gagttaggtttcagatattctacaaaagcagctattactgtcagtgtatctgacatggta
atacctaaagaaaaagagaagcttctaaaagaagcagatgaaatggtaagtaaaattgaa
agccaattcagacgtggtctcatatccgaggaagaaagatatgagagcgtaataaggaca
tggaacatgactacagaaaaagttacagaagctttgatggcaagcttggacaaatttaat
cctatatttatgatggctcattcaggagcaagaggaagtaaaaaccagataaggcagtta
gcaggtatgagaggtcttatggcagacccttcaggaagaattattgagcttcctataagg
tctaactttagagagggtcttaatgtgttggaattcttcatatctactcacggtgcaaga
aaaggtcttgcggatacagctttaagaactgcagactctggttatttgacgagaagatta
gttgatgtgagccaagatgtcatagtcagagaagatgattgtggaaccgatgaaggaatt
tatgtagaagaaataagagaaggaaatgaaataattgaaaaattagctgacagaataata
ggaagagttgcggctgaagacgtggttgataatgaaggcaatataattgtcagaagaaat
gagttgataaacgaagaggaagcagaaaaaatcgaaaaagcaggtattacaaaggtaaag
ataaggtcacttttgacatgtaagtcaagacacggcgtatgtagaatgtgttatggtaga
gaccttgcaacaggtgaacttgtaaatataggcgaagcagtgggcattattgctgcacaa
gctataggcgaaccaggtacacagcttacaatgcgaacattccatactggcggtgtagct
ggtgcagatattacacaaggtcttccaagggtagaagagctttttgaggcaagaaaacca
aaaggacttgctgtaatttctgaaatctctggtgttgtaagaatcaatgagtcaaagaag
agaagagaagtcattgtaacagatgaagaaaacaatatttctaagacttatctcattccc
tatggttcaagacttaaagttcatgatggtcaggtaatacaagctggggatgagttgaca
gaagggtctgtaaatcctcatgaccttttaaagataaaaggaatatttgcagtacagact
tacttgctacaagaggttcaaaaggtttatagattgcagggtgttgaaataaatgataag
catattgaagtaataataagacaaatgatgagaaaagtaaaagtagaagacccaggagat
acttcaatgcttcctggagagcttatagatatgtttaaattcgaagatgaaaacaaaaaa
gcaattgaaaaaggattaagacccgctactggaagaagagctcttttgggaattacaaag
gcggctttggcaacagattctttcttatcagctgcttctttccaagagacgacaagagtg
cttacagatgcggctataaaaggtaaagtagacccgctcttaggattaaaagaaaatgtg
ataataggtaaactaattcctgctggaacaggtttgtcacgctatagaaatatttctgtt
gtaaaaaaagtgaatgaccaacaggaaagacaagataaagaaaaagaagaaacagaagta
aaggcaagcaactaa
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