Thermoanaerobacter sp. RKWS2: OEI98_002804
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Entry
OEI98_002804 CDS
T10300
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
thez Thermoanaerobacter sp. RKWS2
Pathway
thez03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
thez00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
OEI98_002804 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
thez03400
]
OEI98_002804 (mfd)
Enzymes [BR:
thez01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
OEI98_002804 (mfd)
DNA repair and recombination proteins [BR:
thez03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
OEI98_002804 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
DUF924
RecG_dom3_C
MFD_D3
IstB_IS21
AAA_22
Motif
Other DBs
NCBI-ProteinID:
UZQ82860
LinkDB
All DBs
Position
complement(2640020..2642440)
Genome browser
AA seq
806 aa
AA seq
DB search
MNTLAKPDNELQPQTIVNFVSRSMHPFHGKMDILVDDLKYYKNAGYKVLLLSGNQERARI
LKDTLDSFNIDTVVIKDSEYDIQKGQVVIYPASVSKGFEYVDAKFAVISDGEIFGQTKRS
KKTVKIRNADKIKSFTELEVGSYVVHVNYGIGKYEGIEKIKVDGIIRDYLKIIYAGGDTL
FVPVEQLDLVQKYVGPTDNPPKLNKLGGSEWLRAKRKAKKAVADLAKDLIQLYAKRQMVK
GHAFSPDTPWQKEFEEQFPYEETEDQLRCIKEIKEDMEKDRPMDRLLCGDVGYGKTEVAL
RAAFKAVADGKQVAFLCPTTILAYQHYTNFIERFKEFPVKIEMLSRFRTPKEQAQIIKGL
AEGTIDIIVGTHRLLQNDVKFKDLGLLIIDEEQRFGVVHKEKIKKLKENIDVLTLSATPI
PRTLHMSLIGIRDMSVLENPPEDRFPVETYVMEFNEELIKDAILREIGRGGQVYFVYNRV
NGIEKMASLVKDLVPGCRVAVAHGQMEESQLEKVMIDFLNGEYDVLVSTTIIETGLDIPN
VNTIIVYDADKLGLSQLYQLRGRVGRSNRLAYAYFTYRKDKVLSEVAEKRLEAIKEFTEF
GSGFKIAMRDLEIRGAGNLLGAEQHGHINAIGYDLYLKLLEEAIRNLKGEAPKEEITTTI
DIKVNAYIDSSYIEDENLRLEMYKKIASIESREDMIEISEELVDRFGDYPKPVEALLEIA
YLKAIASQLYITEITEKGNVVILKFKDMESVNMEVIEKVIKEYGGNLIFSSQVQPYLTYR
FNKKETIQKELIELVEKIKSLQLVEK
NT seq
2421 nt
NT seq
+upstream
nt +downstream
nt
atgaatactttagcaaagcctgacaatgaactacagcctcaaacaattgttaattttgta
tcaaggtctatgcacccttttcacggcaaaatggatattttagtagatgatttgaagtat
tacaaaaacgcaggatataaagtattgcttttaagtgggaatcaagaaagagcaagaatt
ttaaaagatacgcttgacagttttaatattgatactgtagtgattaaagacagtgaatac
gatatacaaaaagggcaagtggtcatatatcctgcctctgttagcaagggatttgagtat
gtggatgcaaaatttgcggttataagcgatggagaaatttttggtcagactaaaaggagc
aaaaaaactgtaaaaattagaaatgccgacaagataaaaagctttactgaattagaagta
gggtcatatgttgtgcatgtaaattatggtataggaaagtatgaaggcatagaaaagata
aaagtagatgggattataagggattatttaaaaataatttatgcagggggagataccctt
tttgtaccagtagaacaattagaccttgtgcaaaaatatgtggggcctacagacaatcca
cctaagttaaataaattagggggtagtgaatggcttagagcaaaaagaaaagccaaaaaa
gcagtagcagaccttgctaaggatttgatacaactttacgccaaaaggcagatggtgaaa
ggacatgctttttctcctgatactccatggcaaaaggagtttgaagagcaatttccctat
gaagagacggaagaccagttaaggtgtataaaagaaattaaagaggatatggaaaaagac
aggccaatggatagattgctctgtggagatgtgggatatggtaaaacagaagtagcttta
agggctgcctttaaagcggtggctgatggaaaacaggttgcttttttgtgtcctacaact
atcttggcttatcagcattatactaatttcatagaaagattcaaagaatttcctgtaaag
atagaaatgcttagccgttttaggactcccaaagaacaagcgcaaataattaaaggcctg
gctgaagggactatcgatattattgttggtactcacaggcttttacagaatgacgtgaaa
tttaaagatttaggacttttaattatagacgaagaacagaggtttggagttgttcataaa
gagaaaataaaaaaacttaaggaaaatatagacgttttgacattgtcagcaactcctatt
cctagaactttgcacatgtccttgattggtataagggatatgagcgtattggagaatcct
cctgaagacagatttccagtagaaacctatgtgatggaatttaatgaagaattaataaaa
gatgctattttaagggaaattggaagagggggacaagtctattttgtttacaatagagta
aatggcatagaaaagatggcttctttggtaaaagatttagttcctggttgtagagtagct
gtggctcatgggcaaatggaagaaagccaattagaaaaagtgatgattgactttctaaat
ggggaatacgatgttttagtaagtactacaataattgagacagggcttgatataccaaat
gtaaatactattatagtttatgatgcggataagttagggctttcccaattgtatcaatta
agaggaagagtaggtaggtcaaatagacttgcttatgcctattttacctatagaaaggat
aaagttttaagtgaagtggcggaaaaaaggttggaggcgataaaagagtttactgaattt
ggttctggatttaaaattgccatgagagatttggagataagaggtgcaggaaatctcctt
ggagcagaacaacatggtcatattaatgcaattggttatgacttgtatttaaagctttta
gaggaggctatacggaatttaaagggagaagctcccaaagaagagattactaccacaata
gacataaaagtcaatgcttatattgactcttcctatattgaagacgaaaatttaagatta
gagatgtacaagaaaatagcctctatagaatctagagaagatatgatagagatttcagaa
gagcttgtagataggtttggcgattatccaaagcctgtagaggcactattggaaattgct
tatttaaaggctattgcctctcagctctatattactgaaataacggaaaaaggaaacgtc
gttattttaaagtttaaagatatggaatcagtaaatatggaggttatagagaaggtaata
aaagaatatggagggaatttaatattttcaagtcaagtacaaccatatcttacttataga
ttcaataaaaaagagactatacaaaaggaacttattgaattagtagaaaaaataaaaagt
ttgcagttagtggagaaatga
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