Infirmifilum uzonense: MA03_00180
Help
Entry
MA03_00180 CDS
T03924
Name
(GenBank) tRNA-splicing ligase
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
thf
Infirmifilum uzonense
Brite
KEGG Orthology (KO) [BR:
thf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
thf03016
]
MA03_00180
Enzymes [BR:
thf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
MA03_00180
Transfer RNA biogenesis [BR:
thf03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
MA03_00180
Prokaryotic type
tRNA splicing ligases
MA03_00180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
AKG38021
UniProt:
A0A0F7CKP5
LinkDB
All DBs
Position
29120..30568
Genome browser
AA seq
482 aa
AA seq
DB search
MVPPLRKITEYLWEIPPTYKHGMRVPGLVIADEVLIAKMKEDLTLEQVANVAFLPGIYKY
SIVLPDGHQGYGFPIGGVAAFDSEEGVLSPGGVGYDINCGVRVLRTDLSEQEVRPRLREL
AETLFRKVPSGLGSTSGLELSFSELDKVLEEGVSWAISHGYGWKDDPLHIEERGHMEGAD
ANAVSREAKQRGRNQLGTLGSGNHFLEVQKVDKIYDPDIAKVLGIEREGQITVMIHTGSR
GLGHQVASDYLKIMERLIPKYKLPLPDRELVSVPATSDEAQRYFSAMKAAANFAWTNRQI
ITHQVRESFRSVFKRDPDALGLRIIYDVAHNIAKLEEHVVDGKRVKVYVHRKGATRAFPP
GHPEIPADYKSIGQPVLIPGSMGTASYILVGTTKAMEMTFGSSPHGAGRMQSRAEARRSV
RGQEIKNELENRGIVVRAASLAVVAEEAPDAYKDVDRVVLVADAVGIAKKVVRMVPIAVV
KG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atggttcctccattaaggaagataacagaatatctctgggaaataccccccacttacaag
catgggatgcgtgtcccagggcttgtcatcgcggatgaagttctgattgcaaaaatgaag
gaggatttaaccctagaacaggtagcaaatgttgcgtttctccctggcatctacaaatat
tctattgtactgcctgacggccatcagggatatggatttcccatcggtggtgttgccgct
tttgactctgaagaaggagtgttaagtccgggaggcgttggctacgacataaactgtggt
gttcgcgtacttagaacagatttaagtgagcaagaagtcaggcctagacttagagagtta
gctgagactctcttcagaaaggttccatcaggtctcggaagcacaagtggtctagaatta
agcttctccgagttagataaagtcctggaggaaggagtatcgtgggctatctcacacggc
tatggctggaaagacgatccattacatatagaagagcggggccatatggaaggagccgat
gcaaatgctgtttcacgggaagccaaacaaagaggcaggaaccaacttggaactctagga
agcggtaatcatttcctagaggtacaaaaggtcgataagatctacgaccctgatatcgcc
aaggttttagggatagagcgagagggccaaataacagtcatgatacacaccggtagcagg
ggattaggacaccaagttgccagcgattacctcaagattatggagaggcttatccccaag
tataagcttcctctcccagaccgggagttagtgtccgttcctgccaccagcgatgaagcc
caaagatatttctctgcgatgaaggcagctgccaattttgcatggacgaatagacaaata
attactcaccaggttcgcgagagttttcgctcagtgtttaagagagaccctgatgcacta
ggtctaagaataatttatgacgtagctcataacattgcgaagttggaagaacacgtagtg
gatggaaagagagtgaaggtctacgtgcatagaaaaggggcgaccagggcttttccgccg
gggcaccctgagatacctgcagactataaatcgatcggtcagcccgtgcttatacctgga
tcgatggggaccgccagctacattctggtgggtacaaccaaggctatggagatgactttc
gggtcttcaccgcatggggcaggccgtatgcagagcagggctgaggcgcgccgaagcgtg
cgcgggcaggaaataaaaaacgagctcgaaaacagggggatagtggtaagagctgccagt
cttgcggttgtggctgaggaggctccagacgcatacaaagatgtggatcgagtcgtgctc
gtggcagatgctgtgggaatagcaaagaaagttgtacgaatggttccaatagcagttgtt
aagggctag
DBGET
integrated database retrieval system
