Thermogladius calderae: TCELL_0298
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Entry
TCELL_0298 CDS
T02127
Name
(GenBank) hypothetical protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
thg
Thermogladius calderae
Brite
KEGG Orthology (KO) [BR:
thg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
thg03016
]
TCELL_0298
Enzymes [BR:
thg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
TCELL_0298
Transfer RNA biogenesis [BR:
thg03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
TCELL_0298
Prokaryotic type
tRNA splicing ligases
TCELL_0298
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF3783
Motif
Other DBs
NCBI-ProteinID:
AFK50723
UniProt:
I3TD85
LinkDB
All DBs
Position
complement(288118..289566)
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AA seq
482 aa
AA seq
DB search
MPKVYVEKISNYEWRIPRSYKPCMRTDSIVFADEFLLEKMNEDLTLEQAANVACLPGIQE
YAYVMPDGHQGYGFPIGGVAGFDLEEGVISPGGIGYDINCGVRVLRTDLDEEDVRGRLKE
LVDALFRNVPSGVGSTGKIRLSTRELDEVLNRGVEWAVEKGFGWKEDMEYIEEHGSWRMA
DSSKVSNVAKQRGHEQLGTLGAGNHFLEIQVVDHIYNPDIAKVLGFDHVGQVAVMIHTGS
RGLGHQVASDYLIIMERAMRRYGISVPDRELAAVPFKSNEGQDYFKAMAAAANFAWTNRQ
LITHWTRESFKEVFKKDPEELGLHIVYDVAHNIAKIEEHVINNKRYKVVVHRKGATRAFP
PGHPDLPAKYRNIGQPVLIPGSMGTASYILVGVPEGYRTWYSAPHGAGRWLSRGEAIRSY
SPDRVINELAKKGIAVRAATKRVVSEEAPEAYKDVDRVVLVAQKVGIASPVVRLRPIGVV
KG
NT seq
1449 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaagtttacgtggagaagataagcaactacgagtggaggataccgaggtcttac
aagccctgtatgagaacagactctatagtgttcgctgacgagtttctgctagagaagatg
aacgaggacttaacactggaacaggcggctaacgtagcttgccttcctggtatacaggag
tacgcctacgtcatgcccgacggccaccaaggctacggcttcccaattggtggcgtggcc
ggctttgacctagaagagggcgtgattagccctggtggtatcgggtacgacattaactgt
ggtgtcagggtactcagaaccgaccttgacgaggaggacgtgaggggtagactcaaggag
ctggtagacgcactattcaggaacgtaccgagcggtgttggctccacaggtaaaataagg
cttagcacgagagagctggacgaagtcctgaaccgcggggtcgagtgggctgtagagaaa
ggattcggctggaaggaggacatggagtacattgaagagcacgggagctggaggatggca
gactcaagtaaagtgagcaatgtagcaaaacagagagggcacgagcaactcggcactctt
ggagctggcaaccacttcttagagatacaggtggtagaccacatctacaaccccgacata
gccaaagtactcggtttcgaccacgttggtcaagttgctgtaatgatacacacaggtagt
agagggcttggacatcaggtggccagcgactacctcatcatcatggagagggccatgaga
cggtacggcatctctgtccccgacagagaactggcagctgtgccgttcaagagtaacgag
gggcaggactacttcaaggcaatggcagctgctgcgaacttcgcctggactaacaggcag
ttgataacccactggacacgcgagagtttcaaggaggtgttcaagaaagaccctgaagag
ctcgggctgcacatagtctacgacgtggcacacaacatcgcgaaaatagaggagcacgtg
ataaacaacaagaggtacaaggtggtcgttcacaggaaaggggccacgagggctttccct
ccaggacaccctgacctaccggccaagtacaggaacatcggacaaccagtcctgatacct
ggaagcatggggacggcgagctatatactcgttggcgtgccggaggggtacaggacgtgg
tacagtgccccacatggggctgggaggtggctgagcagaggggaggccatcaggtcttac
agccctgaccgagtaataaacgagttggcgaagaaggggatagctgtcagagctgctacc
aagcgcgttgtcagcgaggaggcgcctgaggcttacaaggacgtcgaccgcgtggtcttg
gtggcccagaaggtagggatagctagccctgttgtcaggctgaggcctatcggcgtagtt
aagggctag
DBGET
integrated database retrieval system
