Thermogladius calderae: TCELL_0563
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Entry
TCELL_0563 CDS
T02127
Name
(GenBank) AAA family ATPase, CDC48 subfamily
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
thg
Thermogladius calderae
Pathway
thg04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
thg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
TCELL_0563
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thg03019
]
TCELL_0563
03009 Ribosome biogenesis [BR:
thg03009
]
TCELL_0563
04131 Membrane trafficking [BR:
thg04131
]
TCELL_0563
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
thg04147
]
TCELL_0563
Messenger RNA biogenesis [BR:
thg03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
TCELL_0563
Ribosome biogenesis [BR:
thg03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
TCELL_0563
Membrane trafficking [BR:
thg04131
]
SNARE
SNARE associated proteins
Others
TCELL_0563
Autophagy
Aggrephagy
Other aggrephagy associated proteins
TCELL_0563
Exosome [BR:
thg04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
TCELL_0563
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
CDC48_2
RuvB_N
AAA_16
TIP49
AAA_22
AAA_5
AAA_2
AAA_14
AAA_lid_PRS2_C
AAA_33
AAA_28
Parvo_NS1
RNA_helicase
TsaE
IstB_IS21
AAA_24
nSTAND3
Mg_chelatase
NPHP3_N
AAA_18
Vps4_C
Sigma54_activat
AAA_7
ATPase
DUF815
AAA_25
ABC_tran
ATPase_2
AAA_3
nSTAND_NTPase5
Zeta_toxin
AAA_17
PhoH
NB-ARC
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
AFK50988
UniProt:
I3TE00
LinkDB
All DBs
Position
510048..512237
Genome browser
AA seq
729 aa
AA seq
DB search
MSSERVKLTLRVLEAEPKDVGKGIGRVDPEVLERTGLMNGDIVVIEGKRRTVVRVMESKP
QDRGLGVIRIDNTTRQNAGVKIGDLVIVEKTEAANAVSIKLAPSKYYAPPDSQLADFVKN
KLLNRPLVEEDIVVVPVLGQTIPFKVIYTKPKGPVVVTKDTIVTISEKPMETYRLPRVTY
EDIGGMKHIIQRVRELIELPLKHPELFRKLGIEPPKGILLYGPPGTGKTLLAKAVANEAD
AYFIAINGPEIMSKYYGESEQRLRDIFEQAKKNAPAIIFIDEIDAIAPKRDEVVGEVERR
VVAQLLALMDGLEARGDVIVIGATNRPNALDPALRRPGRFDREIEIPMPDKNARLEILQI
HTRGVPLAKDVDLNKLAEITHGYTGADLAALVREAALHALRRYLPEINLDSPSIPFEILE
KMEVRMEDFMAAYKEIVPSGLREVFVEVPEVKWSDIGGLESIKQELRMSIEWPIKYPETF
KRIGIKPPKGILLYGPPGTGKTLLAKAVATESGANFIAIRGPEVLSKWVGESERAIREVF
RKARLYAPAVIFMDEIDAIAPVRGFAYDSGVSERVVSQLITEMDGIEKLENVVVIAATNR
PDILDPALLRPGRFDKLIYVPPPDPSSRLEIFKIHTRNMPLADDVDLYELAKQTEGYSGA
DIEALVREAALIAIREDLTIDRVYMRHFNEALNKVKPSITQEMIKFYIEWGEKAKQKLPK
EHLRPQVYT
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagtgagagagtcaagcttacactgcgggttctagaggctgagcccaaagacgtg
ggaaagggtattggtagagtagacccggaagtactcgagagaacaggcctgatgaacggg
gacatcgtggtcatcgaaggaaagaggaggacagtggtcagggtaatggagagcaagccc
caggacagggggctaggagtcataaggatagacaacacaactagacaaaacgctggtgtg
aagataggagacctcgtaattgtggagaaaacagaggccgcgaacgctgtctcgataaaa
ctggcgccaagcaagtactacgctccaccagactctcaactagcggacttcgtgaagaac
aagctgctcaaccgcccgctcgttgaagaggacatagtggtagtgcccgtcctggggcag
accataccgttcaaggtgatatacaccaaacccaaggggcctgtcgtggtgacgaaggac
acgatagtaacgatctcggagaagccgatggagacctacaggctgccgcgcgttacctac
gaagacatcggggggatgaagcatatcatacagagggtcagggaacttatcgagctaccc
ttgaagcacccagagctcttcaggaagctggggatcgagccccctaagggtatcctcttg
tacggccctcccggcaccggtaagaccctgctggctaaggctgtagctaatgaggccgac
gcgtacttcatagcgataaacgggcccgagataatgagcaagtactatggtgagtctgag
cagaggctaagggatatcttcgaacaggcaaagaagaacgccccggcgatcatattcata
gacgagatcgacgcgatagcccccaagagagacgaggtcgtaggagaagtcgagaggagg
gtagtagcccaactactcgccttaatggacgggcttgaggctaggggcgatgttatcgtg
ataggcgctacgaacaggcctaacgctctagatccggcactcaggaggcccggtaggttt
gacagagagatagagataccgatgccggacaagaacgcgaggctggagatactacagata
cacactaggggtgtaccgctggccaaagacgttgacttaaacaaactagccgagatcacg
cacgggtacactggggcagacctcgcagccctggtcagagaggcggctctccacgccctc
aggaggtacctgcccgagatcaacctggacagcccgagtatacccttcgagatactcgag
aagatggaggttagaatggaggacttcatggcggcctataaggagatagtccccagcggt
ttgagagaggtcttcgtcgaggtgccagaggttaagtggagcgatataggtgggctggag
agcataaaacaagagctgaggatgagcatcgagtggcccataaaataccccgagacgttc
aagaggatcgggatcaagccccctaagggtatcctcttgtacggccctcccggcaccggt
aagaccctgctggctaaggctgtggcgacggagagtggtgctaacttcatcgctatcaga
gggcccgaggtactcagcaagtgggtaggcgagtccgagagagcgataagagaggtgttc
aggaaggctaggctctacgcgccggcggtaatattcatggacgagatcgacgcgatagcc
cctgttagggggttcgcttacgactcgggagtctccgagagagttgtgagccagctcatc
actgagatggacgggatcgagaagttggagaacgtcgtagtcatcgcggcgacgaacagg
ccggacatacttgacccagccctactaaggccgggcaggttcgataagttgatctacgtc
cctcccccagacccgtcttcgaggctcgagatattcaagatacacaccaggaacatgcct
ctcgcggacgacgtcgacctatacgagctggcgaaacagacggaggggtatagcggggca
gatatcgaggccctcgttagagaggctgccctgatagcgatcagggaggatttgacgatc
gacagggtctacatgaggcacttcaatgaggccttgaacaaggtgaagccgtctataacc
caggagatgatcaagttctacatcgagtggggcgagaaggccaagcagaagttacccaag
gagcatctaagaccgcaagtgtacacgtga
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