Thalassospira sp. GO-4: M9H61_02535
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Entry
M9H61_02535 CDS
T10246
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
thgo Thalassospira sp. GO-4
Pathway
thgo03410
Base excision repair
thgo03430
Mismatch repair
thgo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
thgo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
M9H61_02535 (recJ)
03430 Mismatch repair
M9H61_02535 (recJ)
03440 Homologous recombination
M9H61_02535 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
thgo03400
]
M9H61_02535 (recJ)
DNA repair and recombination proteins [BR:
thgo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
M9H61_02535 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
M9H61_02535 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
M9H61_02535 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Amidohydro_3
Peripla_BP_6
Motif
Other DBs
NCBI-ProteinID:
URK18404
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Position
521230..523020
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AA seq
596 aa
AA seq
DB search
MTEHTKETTFMGIERSVTGKWWRERATDERLATTISQRFGVPEIVGRVMANRGIGLDDAE
SFLSPTLRDLMPDPSSLRDMDMAASRIADAIEKREQMAVFGDYDVDGATSTALLKRFFRA
LGADVPVHIPDRMTEGYGPNAPALLELQRKGANLILTVDCGVTAYGPLQEARDAGIEVIV
VDHHAAEPELPPAVAVVNPNRLDDESGLGHLCAAGVAFLLCVAILRELRSRGWLEKAGVR
APDLRNWLDLVALGTVCDVVPLRGLNRAFVTQGLKVMKHRSNIGMTSLADIAGVNETPSA
YHLGYVLGPRVNAGGRVGESFLGTTLLSGDNPAQAQDIARKLDEYNRERKAIEDIVLDQA
ISAVEGRSKVGSMVLVGGEDWHPGVIGIVASRLKDRYHVPSLVMGLVDGVYKGSGRSVRG
IDLGAAIIAARQAGLLINGGGHGMAAGFTLDPEKQDAFESFLEERFAKIIEENDIRPTIT
VDGALHAHGATIELIDALEKLDPFGAGNAEPRFAFVDCRAVKADVVGADHVRCILTGANG
KGRLKAIAFRCLDNDMGQTLIKHGGRPLHVLGHLRRDTWQGRDGVQLIIDDVSLPV
NT seq
1791 nt
NT seq
+upstream
nt +downstream
nt
atgacagagcacacaaaagaaacgacattcatgggcatcgagcgatccgtcaccgggaaa
tggtggcgtgagcgcgcaacggatgaacgcctggcaaccacgatttcgcagcgcttcggg
gtgccggaaatcgtgggccgggtcatggcaaatcgtggcatcggacttgacgatgccgaa
agttttctgtccccgacattgcgcgacctgatgccagatccatcgtcattgcgagacatg
gacatggcggcatcacgcatcgccgatgccatcgaaaagcgcgagcagatggcggtattt
ggtgattatgacgttgatggtgcaaccagtaccgcgcttttgaaacgtttcttccgggcg
cttggcgcagacgttccggtacatattcccgaccgcatgaccgaaggatacggtcccaac
gccccggcattgctggagctgcagcgcaagggtgcgaaccttatcctgacggtcgattgc
ggggtgacggcctatggcccgttacaagaggcaagggatgccgggatagaggtcattgtg
gttgaccatcacgcggccgaacctgaattgccgcccgccgtcgcggtggtcaatccgaac
cggcttgatgatgaaagcgggcttggtcatctgtgtgcagccggtgtggcgttcctgtta
tgtgtggcgatcctgcgtgaattgcgcagtcgcggctggcttgaaaaggcaggggttcgg
gcacccgatttgcgcaactggcttgatctggttgcgctgggaaccgtgtgtgatgtcgtg
ccgttgcgcgggttgaaccgggcctttgtgacccaggggctcaaggtcatgaaacatcgg
tccaatatcgggatgacgtcacttgccgatattgccggggtcaatgaaacgccaagtgcc
tatcatcttggttatgtcctggggccgcgtgtgaatgcaggcgggcgtgttggcgaaagt
ttccttggtacgaccttgttgtcgggggacaacccggcgcaggcgcaagatatcgcgcgc
aagcttgacgaatataaccgtgaacgcaaggcgatcgaggatattgtccttgatcaggcg
atcagcgcggtggaaggccggtcaaaagtcgggtccatggtgctggtgggcggcgaggac
tggcatcccggcgtgatcgggattgtggccagccgtctcaaggatcgctatcacgtgccg
tcgctggtcatggggttggtggatggtgtgtataagggatcgggccgatctgtgcgcggt
attgatcttggtgcggcgattattgctgcacgtcaggccgggcttctgattaacgggggc
ggtcacggcatggcggcgggctttacgcttgatccggaaaagcaggacgcgtttgaatcc
ttccttgaagaacggttcgcgaaaatcatcgaagaaaacgatattcgtcccaccatcacg
gtggacggggccctgcatgcccatggggcgacgattgaactgattgatgcgcttgaaaag
cttgacccatttggtgcgggcaatgccgagcccagatttgcctttgtcgattgtcgtgcg
gtaaaggccgatgtggttggcgccgatcatgtgcgctgtattctgaccggtgccaatggc
aaaggacggctcaaggcgattgcgttcagatgccttgataatgacatgggtcagactttg
atcaagcatggcggtcggccgttgcatgttctggggcatttgcgccgcgatacatggcag
ggccgtgacggcgttcagctgattattgatgacgtgtctttgccggtctga
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