Thalassospira sp. GO-4: M9H61_18105
Help
Entry
M9H61_18105 CDS
T10246
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
thgo Thalassospira sp. GO-4
Pathway
thgo02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
thgo00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
M9H61_18105 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
thgo03021
]
M9H61_18105 (rpoD)
Transcription machinery [BR:
thgo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
M9H61_18105 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Motif
Other DBs
NCBI-ProteinID:
URK17448
LinkDB
All DBs
Position
3952136..3954193
Genome browser
AA seq
685 aa
AA seq
DB search
MSSKTSNAEEKKNSSENADGPLLDTYKAAIKKLIAKGKEKGHISVDELNAALPSEHFSSE
QIEDVMSNLNEMGINVIDGDEADDNDDDNDDSDNDPSGNISADDVGRTDDPVRMYLREMG
SVELLSREGEIAIAKRIEAGRDMMIGGICESPLTIRAIVNWHDQLQAGELLLRDVIDLET
TYGGGPDAEIGAEEGEDEDVDAEADVESFDSANDDEDEDAETETPDAIGGEEAEEEEDDE
SEDSEGEEGGEGDDEDEDENEQVNVSLSKMEEELTEQVLEKFELIAKTYEKLHKAQEQRL
VALNKGETVPAATEKRYTKLKNEMVELMEDVHLNNFRIEELLDHLTGLNNRLLGLEGKLL
RFADRCKIKRPDFVKQYQGNELDPNWMERVAGLPGKGWKTFIERYPEEIAKLREDIGGVS
AEVGLPISEFRRVYGVVNKGEREAGRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEG
NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLVRTSR
QMLHEIGREPTPEELAEKLQMPLEKVRKVLKIAKEPISLETPIGDEEDSHLGDFIEDKNA
VQPLDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQFSVTRERIR
QIEAKALRKLKHPSRSRKLRSFLDY
NT seq
2058 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtctaagacttcgaacgctgaagagaaaaagaactcttctgaaaacgcagacgga
cctcttctcgatacatataaagcggccatcaaaaagctcattgccaagggcaaggagaaa
ggccacatctctgtcgatgagttgaacgcggcactgccgtcagaacatttctcctctgag
cagatcgaagacgtgatgagcaatctcaacgagatgggcatcaatgtcatcgatggtgat
gaggccgatgacaatgatgacgacaacgacgattccgacaacgatccgagtggcaatatt
tctgccgatgatgttggccgtaccgatgacccggtacgtatgtatctgcgcgagatgggc
agtgtcgaactgctgtcgcgtgaaggcgaaatcgccattgccaagcgtatcgaggccggc
cgtgacatgatgattggcgggatttgcgaatccccgctgaccattcgtgccatcgtgaac
tggcatgatcagcttcaggctggtgagcttttgctccgtgacgtcattgaccttgaaacc
acctatggcggtggcccggatgccgaaatcggtgccgaggaaggcgaggacgaagacgtt
gatgcagaggcagatgtcgaaagctttgactctgccaatgatgatgaggacgaagacgcc
gaaaccgaaacccccgatgcgatcggtggcgaggaagccgaagaagaagaggacgatgag
tccgaagactccgaaggtgaagaaggcggcgaaggcgatgatgaggacgaagacgagaac
gagcaggtcaatgtttcgctttccaagatggaagaggaactgaccgagcaggttctcgag
aaattcgaactgatcgccaagacctatgagaagctgcacaaggcgcaggagcagcgtctg
gtggcgctgaacaagggtgaaaccgttccggcggcgaccgagaagcgctataccaagctc
aagaacgagatggtcgagctgatggaagatgttcacctgaacaatttccgcatcgaagag
cttcttgaccatctgaccgggcttaacaaccgtcttctgggtcttgagggcaagcttctg
cgctttgctgatcgctgcaagatcaagcgtccggacttcgtcaaacagtatcagggcaat
gaacttgacccgaactggatggaacgtgttgccggtctgccgggcaagggttggaaaacc
tttatcgaacgctatcccgaagaaatcgccaagctgcgcgaagatatcggtggtgtttcg
gccgaggtcggtcttccgatttccgagttccgccgtgtttacggtgttgtaaacaagggc
gaacgcgaggccggccgtgcgaaaaaggaaatgatcgaggccaacctgcgtctcgtgatt
tcgatcgccaagaaatataccaaccgtggtcttcagttccttgaccttattcaggaaggc
aatatcggcctgatgaaggcggtggacaaattcgaataccgtcgcggttacaaattctcg
acctatgcgacctggtggatccgtcaggccattacccgctcgatcgcggaccaggcccgt
acgatccgtattccggttcacatgatcgaaaccatcaacaagctggtgcgtacctcgcgc
cagatgctgcatgaaatcggtcgtgagccgaccccggaagagctggctgaaaagcttcag
atgccgcttgaaaaggttcgcaaggttctgaaaatcgccaaggagccgatctcgctcgaa
accccgatcggggacgaggaagacagccatcttggcgatttcatcgaagacaagaacgcc
gttcagccgcttgatgcagcgatccaggccaacctgcgtgaaaccaccacgcgcgttctg
gcatcgctcaccccgcgtgaagaacgtgttctgcgtatgcgtttcgggatcggcatgaat
accgaccacacccttgaggaagttggtcagcagttctctgttacccgtgaacgtatccgt
cagatcgaggcaaaagcgctgcgcaagctcaaacatccgtcgcgctcgcgcaagctgcgg
tcattcctcgattattaa
DBGET
integrated database retrieval system
