Thermococcus sp. 5-4: CDI07_00795
Help
Entry
CDI07_00795 CDS
T05088
Name
(GenBank) RNA-binding protein
KO
K03679
exosome complex component RRP4
Organism
thh
Thermococcus sp. 5-4
Pathway
thh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CDI07_00795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thh03019
]
CDI07_00795
Messenger RNA biogenesis [BR:
thh03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
CDI07_00795
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
CDI07_00795
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ECR1_N_2
KH_6
RRP4_S1
KH_1
ECR1_N
RRP40_S1
KH_2
KH_KhpA-B
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
ASA76892
UniProt:
A0A1Z2TKD5
LinkDB
All DBs
Position
137031..137801
Genome browser
AA seq
256 aa
AA seq
DB search
MRRIFVKNRELVVPGTLLAQGPFKSGRGTFREGNRIYSTVVGLVEIRGDAIRVIPLEGPY
IPEVGDNVLGKITDVRFSNWSVDIGAPYEANLRVQDATEERIDILKTDLRKIFDIGDIIY
ARIKAYNEINQIDLTTRGMPFKGGPLRGGQIVKITPSKVPRLIGKGGSMINLIKKLTGTR
IIVGQNGWVWVSGKKEEMEKLAIEAILKVNRESHTQGLTDRVKELLMTRLQELKEQGVVE
EIPQIEEPNAGEGEGE
NT seq
771 nt
NT seq
+upstream
nt +downstream
nt
atgagacggatttttgtaaagaatagggaactggtggttcctgggactctgcttgcccag
ggaccgtttaagagcggaagaggaacgttcagagaaggcaacaggatatattcgacggtc
gttggactggttgagatcaggggagacgccataagggtgataccactcgagggaccgtac
atcccagaggtgggcgacaacgttctcggcaagataaccgacgtcaggttctccaactgg
agcgttgacataggggcaccctacgaggccaacctgcgcgttcaggacgccactgaggag
cgcatagacatactgaagaccgacctgaggaagatattcgacatcggcgacataatctac
gccaggataaaggcgtacaacgagataaaccagatagacctgaccacgaggggcatgccc
ttcaagggcggtccgctcaggggagggcagatagtgaagataacgccctccaaggtgccg
aggctcatcggtaagggcggttcgatgataaacctcatcaagaagctgaccgggacgagg
ataatagtcggccagaacggctgggtctgggtcagcggcaagaaggaagagatggagaag
ctcgcgatcgaggcgatactcaaggtgaacagggagagccacacccagggactgaccgac
agggtcaaggaacttctcatgacgagactccaggagctcaaggagcagggagtcgttgag
gagataccccagattgaagagccaaatgctggagagggtgaaggagaatga
DBGET
integrated database retrieval system