KEGG   Thermococcus sp. 5-4: CDI07_00795
Entry
CDI07_00795       CDS       T05088                                 
Name
(GenBank) RNA-binding protein
  KO
K03679  exosome complex component RRP4
Organism
thh  Thermococcus sp. 5-4
Pathway
thh03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:thh00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    CDI07_00795
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:thh03019]
    CDI07_00795
Messenger RNA biogenesis [BR:thh03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     CDI07_00795
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     CDI07_00795
SSDB
Motif
Pfam: ECR1_N_2 KH_6 RRP4_S1 KH_1 ECR1_N RRP40_S1 KH_2 KH_KhpA-B KH-I_KHDC4-BBP
Other DBs
NCBI-ProteinID: ASA76892
UniProt: A0A1Z2TKD5
LinkDB
Position
137031..137801
AA seq 256 aa
MRRIFVKNRELVVPGTLLAQGPFKSGRGTFREGNRIYSTVVGLVEIRGDAIRVIPLEGPY
IPEVGDNVLGKITDVRFSNWSVDIGAPYEANLRVQDATEERIDILKTDLRKIFDIGDIIY
ARIKAYNEINQIDLTTRGMPFKGGPLRGGQIVKITPSKVPRLIGKGGSMINLIKKLTGTR
IIVGQNGWVWVSGKKEEMEKLAIEAILKVNRESHTQGLTDRVKELLMTRLQELKEQGVVE
EIPQIEEPNAGEGEGE
NT seq 771 nt   +upstreamnt  +downstreamnt
atgagacggatttttgtaaagaatagggaactggtggttcctgggactctgcttgcccag
ggaccgtttaagagcggaagaggaacgttcagagaaggcaacaggatatattcgacggtc
gttggactggttgagatcaggggagacgccataagggtgataccactcgagggaccgtac
atcccagaggtgggcgacaacgttctcggcaagataaccgacgtcaggttctccaactgg
agcgttgacataggggcaccctacgaggccaacctgcgcgttcaggacgccactgaggag
cgcatagacatactgaagaccgacctgaggaagatattcgacatcggcgacataatctac
gccaggataaaggcgtacaacgagataaaccagatagacctgaccacgaggggcatgccc
ttcaagggcggtccgctcaggggagggcagatagtgaagataacgccctccaaggtgccg
aggctcatcggtaagggcggttcgatgataaacctcatcaagaagctgaccgggacgagg
ataatagtcggccagaacggctgggtctgggtcagcggcaagaaggaagagatggagaag
ctcgcgatcgaggcgatactcaaggtgaacagggagagccacacccagggactgaccgac
agggtcaaggaacttctcatgacgagactccaggagctcaaggagcagggagtcgttgag
gagataccccagattgaagagccaaatgctggagagggtgaaggagaatga

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