Thermococcus sp. 5-4: CDI07_00800
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Entry
CDI07_00800 CDS
T05088
Name
(GenBank) exosome complex exonuclease Rrp41
KO
K11600
exosome complex component RRP41
Organism
thh
Thermococcus sp. 5-4
Pathway
thh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CDI07_00800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thh03019
]
CDI07_00800
Messenger RNA biogenesis [BR:
thh03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
CDI07_00800
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
CDI07_00800
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
EF-hand_1
Motif
Other DBs
NCBI-ProteinID:
ASA76893
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All DBs
Position
137798..138547
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AA seq
249 aa
AA seq
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MMGKPEGLKLIDENGKRIDGRKKYELRPIKMEVGVLKNADGSAYVEWGKNKVLAAVYGPR
EIHPKHLQRPDRAILRVRYNMAPFSVEERKKPGPDRRSVEISKVIRGALEPALILEMFPR
TSIDVFIEVLQADAGTRVAGITAASLALADAGVPMRDLVAACAAGKIEGEIVLDLNKDED
NYGEADVPVAIMPLKNDITLLQMDGYLTKDEFVEAVRLAIKGAKAVYQKQREALKVKYLK
IAEEVGGGE
NT seq
750 nt
NT seq
+upstream
nt +downstream
nt
atgatgggcaagccagagggtttaaagctcatagatgagaacgggaagagaatagacggg
agaaagaagtacgaactcaggcctataaagatggaagttggcgtgctgaagaacgccgac
ggttctgcctacgttgagtggggcaagaacaaggttctcgctgccgtttacggtccgagg
gagattcaccccaagcacctccagagaccggacagggccatactccgcgtgaggtacaac
atggcgcccttcagcgtggaggagcgcaagaagcccggtccggacaggaggagcgtcgag
ataagcaaggtcataaggggcgctcttgagccggcactcatactcgagatgttcccgaga
acgtccatagacgtattcatcgaggtccttcaggccgacgcgggaacgagggtcgccgga
ataacggcagcgtcactcgccctggcggatgcgggtgtgcccatgagggacctggtcgcc
gcctgcgccgccggtaagatagagggcgagatagtcctcgacctcaacaaggacgaggac
aactacggcgaggccgacgttccagttgccataatgcccctcaagaacgacataacgctg
ctccagatggacggctacctcaccaaggatgagttcgtcgaggccgtgaggctcgccatc
aagggtgccaaggcggtctaccagaagcagcgcgaggcgctgaaggtcaagtatctcaag
atagccgaggaggtcggtggaggtgagtga
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