Thermococcus sp. 5-4: CDI07_01930
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Entry
CDI07_01930 CDS
T05088
Symbol
rpoA1
Name
(GenBank) DNA-directed RNA polymerase subunit A'
KO
K03041
DNA-directed RNA polymerase subunit A' [EC:
2.7.7.6
]
Organism
thh
Thermococcus sp. 5-4
Pathway
thh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
thh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CDI07_01930 (rpoA1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
thh03021
]
CDI07_01930 (rpoA1)
Enzymes [BR:
thh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CDI07_01930 (rpoA1)
Transcription machinery [BR:
thh03021
]
Prokaryotic type
Archaeal type
RNA polymerase
Core subunits
CDI07_01930 (rpoA1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RNA_pol_Rpb1_5
Motif
Other DBs
NCBI-ProteinID:
ASA77106
UniProt:
A0A1Z2TKY7
LinkDB
All DBs
Position
complement(332542..335259)
Genome browser
AA seq
905 aa
AA seq
DB search
MQSMKKVIGSIEFGILSPQEIRKMSAAEITVPDTYDDDGYPIEGGLMDKRLGVIDPGLRC
ETCGARAGDCPGHFGHVELARPIIHVGFAKTIHRVLESTCRECGRIKLTEEEIEEYTHKF
EVMGDRKKAKDRLIKEIHKKAKERMVCPHCGAPQFPVKFERPTIYWELRKDEEGNEYKHR
MMPSEVRDRLEKIPDKDLHLLGLHPEKARPEWMVLTVLPVPPVTMRPSITLESGIRAEDD
LTHKLVDIIRINNRLKSNIEAGAPQLIIEDLWDLLQYHVTTYINNETSGIPPAKHKSGRP
LKTLAQRLKGKEGRFRGNLSGKRVNFSARTVISPDPMISINEVGVPIAVAMELTVPEKVT
EFNFEKLKKMVLNGPEKYPGANYVIDPEGRRIRLMENNLELIAEKLDLGWTVERHLLDGD
IVLFNRQPSLHRMSIMAHRVRVMPYRTFRLNLAVCPPYNADFDGDEMNLHVPQTEEAQAE
AKILMEVQNHIISPRYGGPLIAGIQDHISGGYLLTREGAYFTRSEVEQMLMFAGVDVDKL
PKPDKVENGVELWSGKVIFSLLLPDDLTIWYRNKLCDEPERCEALEKLIEEKLIPDEEEV
RKLAYDGFTYILNGKLLSGAIDKKAYGREDGKLLDLIVREYGVERARQFLDQVTKLAIWV
ITHKGFTTAIDDEDLPSEALDRIHEIIREAEERVNRLIEAYKNGELEPLPGKTLEETLES
NIMAVLAEARDNAGKVAERYLGMTNHAVIMAKTGARGKMLNITQMAAMLGQQSIRGKRLY
RGYRGRVLTHFKPGDLGARAKGFVTNSYKSGLTPQEYFFHAMGGREGLVDTAVRTAQSGY
MQRRLINALQDLKVDYDGTVRDPTGIIVQFKYGEDGIDPMKSWGGKTVDVDRVIVKTLLK
VRGKG
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
atgcagtcgatgaaaaaggtcatcggaagtattgagttcggaatcctctcaccccaggaa
atcagaaagatgagcgcggccgagataaccgtcccagacacctacgacgatgacggttac
ccgatagagggcggcctcatggacaagaggctgggtgtcatcgatccgggactgcgctgt
gagacctgtggagcgcgcgccggagactgtcccggccacttcggccacgtcgagctggcc
aggccgatcatccacgtcggattcgccaagaccatccaccgcgttctggagagcacctgc
cgcgagtgcggaaggataaagctcaccgaggaggagatagaggagtacacccacaagttc
gaggtcatgggcgacaggaagaaggccaaggacaggctcatcaaggagattcacaagaag
gccaaggagaggatggtctgcccgcactgtggtgctccccagttcccggtcaagttcgag
aggcctaccatctactgggagctcaggaaggacgaggagggcaacgagtacaagcacagg
atgatgccaagcgaggtcagggacaggcttgagaagatacccgacaaggacctgcacctc
ctcggcctgcacccggagaaggccaggccagagtggatggtcctcacggttctgccggtt
ccgccggttactatgagaccgtccatcaccctcgagagcggcattagggctgaagacgac
ctcacccacaagctcgttgacatcatccgtatcaacaatcgccttaagagcaacatcgag
gccggtgcgccgcagctcatcatcgaggacctctgggacctcctccagtaccacgtcacc
acatacatcaacaacgagacctcaggcattccgccggccaagcacaagagcggaaggccc
ctcaagaccctggcacagaggctcaagggtaaggagggacgcttccgtggaaacctcagc
ggtaagcgtgtcaacttctctgcccgtacggtcatcagccccgacccgatgataagcatc
aacgaggtcggcgttccgatagcggtagctatggagctcaccgttccagagaaggtcacc
gagttcaacttcgagaagctcaagaagatggtcctcaacgggcccgagaagtatccgggc
gccaactacgttatagacccagagggaaggagaatccgcctcatggagaacaacctcgag
ctcatcgcagagaagctcgacctaggctggacggttgagagacacctgctggacggcgac
atagtcctcttcaacaggcagccgtcccttcacaggatgagtataatggcccaccgcgtt
agggttatgccctacagaaccttccgcctcaacctcgccgtttgcccgccgtacaacgcg
gacttcgacggtgacgagatgaacctccacgtgccgcagacggaggaggctcaggccgag
gcgaagatactcatggaggttcagaaccacattatctcgccgcgctacggtggcccgctc
atcgcaggaatccaggaccacatatccggcggctacctgctcacgcgcgagggcgcctac
ttcacccgctcagaggtcgagcagatgctcatgttcgccggcgttgacgtggacaagctt
ccgaaacctgacaaggtcgagaacggcgtcgaactctggagtggaaaggttatattctcc
ctcctcctgccggacgacctcacgatctggtaccgcaacaagctctgcgacgagccggag
cgctgtgaggctctcgagaagctcatagaggagaagctcatccccgacgaggaggaggtc
agaaagctcgcctacgacggcttcacctacatcctcaacggaaagctcctcagcggtgcg
atagacaagaaggcctacggaagggaggacggaaagctcctcgacctcatagtgagggag
tacggcgtcgagagggcgaggcagttcctcgaccaggtcaccaagctcgcgatctgggtc
ataacgcacaagggcttcacgaccgcgatagacgacgaggaccttccgagcgaggccctc
gacaggattcacgagataatacgcgaggctgaggagagggttaacaggctcatagaggcg
tacaagaacggcgagctcgagccgctgccgggtaagaccctcgaagagactctggagagc
aacataatggccgttctggccgaggcgcgtgacaacgcaggtaaggtcgccgagaggtac
ctcggtatgaccaaccacgcagtcataatggccaagaccggtgcgaggggtaagatgctc
aacatcacccagatggcggcgatgctcggtcagcagtccatccgtggaaagaggctctac
cgcggctaccgcggaagggttctcacgcacttcaagcccggtgatttgggagccagggcg
aagggattcgtcaccaactcctacaagagcggtctaaccccgcaggagtacttcttccac
gcgatgggtggtagagagggactggtcgacacggccgtcaggaccgcccagagcggttac
atgcagaggaggctcatcaacgcgctccaggacctcaaggtggactacgacggaaccgtc
agagacccgaccggaatcatcgttcagttcaagtacggcgaggatggaatagacccaatg
aagagctggggaggcaagaccgtggacgttgatagggtgattgtaaaaaccctgctcaaa
gtgagggggaaggggtga
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