Thermococcus sp. 5-4: CDI07_05625
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Entry
CDI07_05625 CDS
T05088
Name
(GenBank) RNA helicase
KO
K03725
putative ATP-dependent RNA helicase [EC:5.6.2.-]
Organism
thh
Thermococcus sp. 5-4
Brite
KEGG Orthology (KO) [BR:
thh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thh03019
]
CDI07_05625
Messenger RNA biogenesis [BR:
thh03019
]
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Others
CDI07_05625
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF5814
DEAD
Helicase_C
ResIII
ATPase
AAA_25
Motif
Other DBs
NCBI-ProteinID:
ASA78681
LinkDB
All DBs
Position
complement(1018124..1020739)
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AA seq
871 aa
AA seq
DB search
MLFVVRPGRKKNELEAFFIENEPEKLTAMKNLKADRIYRFIMREGRLFKVLEGSQYRNPK
EIEKLLRGARIVLVNADEWEDYFKRRLQNKRVERAELCRLCLLDGRITVLTEGNRIKYHG
EYICERCAEDELKRELRFRFKSVAMFDQAKKLLDRFRDLDKVLYAFDPRFDPTRHPEITK
WDELKAKHVRVEKIHLDELPLPGKFKSVLKAEGVNELLPVQSLAVKGGLLEGESLLVVSA
TASGKTLIGELAGVPKAMKGQKMLFLVPLVALANQKYEDFKRRYSKLGLRVAIRVGMSRI
KTRDELVVVDTGIDADIIVGTYEGIDYLLRAGRKIGNVGTIVIDEIHTLDDEERGPRLDG
LIARLRKLYPSAQFIGLSATVGNSGELARELGLKLVLYDERPVDLERHIIIARNESEKWR
HIAVLCRAEAMRKSRQGYKGQTIVFTFSRKRTHELAAYLTSKGLKAKPYHSGLPYKQRKL
TEMEFLAQRLDVVVTTAALGAGVDFPASQVIFESLAMGNKWLSVREFHQMLGRAGRPLYH
EKGRVYLIVEPGRKYSAQMESSEDEVAFKLLTAPIEPVLVEWSDELEQDNVLAHSCVFNR
LDVIEDVQSKCLGANQSAEKVLEKLEEFGFVRLKGSLVDVTPYGRAVSMSFLLPKEASFI
RNNLGKKPAQWIAVKLLPFENLYLSGTLQRELEGAVRGRLSANVFSPSFASILEELDKVI
PELSPNAAERLFTLYQEFFMCPEEDCTDYAMERVSNMIIELRRNGKHPTQIAEHFRKVYG
LIVYPGDVFTWLDGIVRKLEAVERIARVFRVRSAEEEAKVMKREIEEGRTIRRDRGEERS
YQRPSSRGYHGKSGNRTQTRKGLDGRRKRAG
NT seq
2616 nt
NT seq
+upstream
nt +downstream
nt
atgctcttcgtcgtgaggccagggagaaagaagaacgagcttgaggcattcttcatcgag
aacgagcccgaaaagctcaccgccatgaagaacctgaaggccgacaggatataccgcttc
ataatgcgcgaggggaggctcttcaaggttctcgaggggagtcagtaccgcaatccaaag
gagatcgagaagctcctccgcggtgccagaatcgtccttgtgaacgccgacgagtgggag
gactacttcaagaggaggctccagaacaagagggttgaacgtgccgagctctgccgcctc
tgcctcctcgacggcaggataaccgtcctcaccgagggcaaccgcattaaataccacggc
gagtacatctgcgagcgctgtgccgaggacgagctgaagagggagctccgcttcaggttc
aagagcgttgccatgttcgaccaggcaaaaaagctcctcgacaggtttagagacctcgat
aaagtcctgtatgcctttgaccctcgctttgacccgacgaggcatccggagataaccaag
tgggatgaactgaaggccaagcacgtgcgcgttgagaaaatccacctcgacgagctccct
cttcccgggaagtttaaatccgttctcaaggcggaaggcgttaacgagctcctcccggtc
cagagcttggcggtaaagggcggcctcctcgagggcgagagccttctcgtggtttcggca
actgcgagcggcaaaaccctcatcggcgagctggcgggagttcccaaggccatgaaaggt
cagaagatgctcttcctcgtccccctcgtcgcgctggccaaccagaagtacgaggacttc
aagcggagatactcaaagctcgggctgagggtggcgataagggttggaatgagccgcata
aagacccgggacgagctggtggtcgttgacacgggcatcgatgccgacatcatagtggga
acctacgagggtatagactacctcctccgtgccggcaggaagatcggcaacgttggaacc
atagtgatagatgagatacacaccctcgacgacgaggagcgcgggccaaggctggacgga
ctaattgcgaggctgaggaagctctatccgagcgcgcagttcattggcctgagtgccacc
gtaggaaattccggcgaactggccagagaactggggttaaaactggtgctctacgacgag
agaccggtggatttggagaggcacataatcatagcgagaaacgagtccgagaagtggcgc
cacatagcggttctctgccgggcggaggcgatgagaaaatcccggcagggctacaagggg
cagacgatagtcttcaccttctcgcgcaagaggacgcacgagcttgcggcttatctcacg
agcaaagggctgaaagccaagccctaccactccggtttaccttacaaacagaggaagctc
accgagatggagtttttagcccagaggctcgacgttgtggtcaccacagccgcccttggg
gccggcgttgactttcccgcttcacaggtcatctttgagagcctcgcaatgggcaacaag
tggctgagcgtgagggagttccaccagatgctcgggagagctggaaggccgctctaccat
gagaagggcagagtctacctcatcgttgagcccgggaggaagtattccgcccagatggaa
agctcggaggacgaagttgcattcaaactcctcaccgcaccgattgagcctgttcttgtc
gagtggagcgacgagcttgagcaggacaacgttttggctcattcctgcgtcttcaatagg
ctcgacgtcatcgaggatgtccaatccaaatgcctcggcgccaaccagagtgcggaaaag
gttctcgaaaagcttgaggagttcggcttcgtccggcttaagggctccctcgtcgatgtc
accccctacggaagggccgtgagcatgagcttcctcctgcccaaggaggcctccttcata
aggaacaaccttggaaagaagcccgcccagtggatagccgtcaagctcttgcccttcgag
aacctctacctgagcggaacgctccagagggagcttgagggtgcagtgagggggaggctg
agcgccaacgtattctcgccgagctttgcttccatccttgaggagctcgacaaggtcatc
ccggagctcagccctaacgccgccgagaggctcttcacgctctaccaggagttcttcatg
tgtcccgaggaggactgcacggactatgccatggagcgcgttagcaacatgataatcgag
ctgaggaggaacggaaagcaccccacgcaaatagcggagcacttcaggaaggtctacggg
ttgatagtctatcctggagacgtcttcacgtggcttgacggcatcgtgaggaagcttgaa
gcggtggagaggatcgcgagggtcttccgcgtgagaagtgccgaggaggaggcgaaggtt
atgaagagggaaatcgaggagggcagaacgatacgcagggaccgcggggaggagagaagt
taccagaggccttcaagccgtggataccacgggaaatcggggaataggacccagacccga
aaagggctggacggtaggaggaagagggcaggctga
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