Thermococcus sp. 5-4: CDI07_05885
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Entry
CDI07_05885 CDS
T05088
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
thh
Thermococcus sp. 5-4
Pathway
thh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CDI07_05885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thh03019
]
CDI07_05885
03009 Ribosome biogenesis [BR:
thh03009
]
CDI07_05885
Enzymes [BR:
thh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CDI07_05885
Messenger RNA biogenesis [BR:
thh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CDI07_05885
Ribosome biogenesis [BR:
thh03009
]
Prokaryotic type
rRNA helicases
CDI07_05885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ASA77842
UniProt:
A0A1Z2TN22
LinkDB
All DBs
Position
complement(1067348..1068583)
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AA seq
411 aa
AA seq
DB search
MSFESLGLSKATLVAVREKGFETPTDIQREVIPRLLSGDVDIIGQSQTGTGKTAAFALPI
IEAIDPKIKAVQAIILTPTRELALQVADEIKSLRGRKRVYVYAIYGGQPIGPQIRALERG
THVVVGTPGRVLDHIRRGTLDLSSVKFFILDEADRMLDMGFIDDIEAIFRETPRRKRVLM
FSATMPPEIRRLARRYMGDYEVISVSSDELVPEMVDQEYVEVVPARKFTVLKKILSDDFY
GIVFCATKRETRELSEKLRRGGYSAEALNGDMSQAARERTFWRFKTKRTGILVATDVAAR
GLDVQDISHIVNYSLPMTAEDYVHRIGRTGRMGKRGRAITFIMPGEFKRLRYIAQVAGVE
IRKSELSEEIPKEYRERYERGHSDGYRRNGRRNSRYRGNSRGYSKNSRGRW
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgagttttgaaagcttaggcttatccaaggccacgttagtggcggttagagagaagggt
tttgagaccccaacggacattcagagggaagtcattccacgtcttctatcgggcgacgtc
gatataatcggccagtcccagaccgggacggggaaaacagctgcctttgcactccccata
atcgaggcgattgacccgaagataaaggccgttcaggcaataatattgacccccacgagg
gagctcgccctccaggtggcggatgaaatcaagagtctccgcgggaggaagagggtttac
gtctatgccatctacggcggccagccgatagggccgcagatcagggctcttgagagggga
acccacgttgtagtcggaacccccgggagggttctcgaccacataaggcgcggaaccctc
gacctgagctccgtgaagtttttcatcctcgatgaggctgacagaatgctcgacatgggc
tttatagacgacatagaggcgattttcagggagaccccgaggagaaagagggtgctgatg
ttttctgccaccatgccccccgagattagaaggctcgcgaggcgctacatgggggactac
gaggtgataagcgtcagcagcgacgaactcgtgcccgagatggtggatcaggagtacgtg
gaggtcgttcccgcgagaaagttcacggtgctgaagaagatcctcagcgacgacttctac
ggcatagtcttctgcgccaccaagagggaaaccagagagctgagcgagaagcttaggagg
gggggctacagcgccgaggctttaaacggcgacatgagccaggccgcccgtgagagaacc
ttctggcgcttcaagaccaagaggacggggattctcgtggcaaccgatgtcgccgcgcgt
ggcttggacgtccaggacataagccacatcgtcaactactccctgcccatgacggccgag
gactacgtccacaggatagggagaaccggcaggatgggcaagcggggaagggcgataacc
ttcataatgcccggcgagttcaagaggctgcgctacattgctcaagttgcaggggtggag
ataaggaaatccgagctcagcgaagaaatcccgaaggagtaccgggagaggtacgagcgc
ggccattcagatggctacagaagaaacggaagaagaaattcccgttaccgcgggaactcc
cggggctattctaagaactcccgaggtagatggtga
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