Thermococcus sp. 5-4: CDI07_06200
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Entry
CDI07_06200 CDS
T05088
Symbol
tfb
Name
(GenBank) transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
thh
Thermococcus sp. 5-4
Pathway
thh03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
thh00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
CDI07_06200 (tfb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
thh03021
]
CDI07_06200 (tfb)
Transcription machinery [BR:
thh03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
CDI07_06200 (tfb)
Prokaryotic type
Archaeal type
TFB
CDI07_06200 (tfb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
BRF2-like_C_cyclin_rpt
Sigma70_r4
Zn_Ribbon_Prim
RB_B
HTH_Tnp_ISL3
HTH_AsnC-type
RUBY_RBDX
Zn_ribbon_tTFIIB
FtrD-like
Zn_ribbon_IS1595
HTH_24
ADK_lid
ORC6
Zn_ribbon_RRN7
Ribosomal_S27e
FYDLN_acid
Lar_restr_allev
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
ASA77902
LinkDB
All DBs
Position
complement(1129376..1130275)
Genome browser
AA seq
299 aa
AA seq
DB search
MSKRRVCPVCGSTEFIYDPGRGEVVCKVCGYVIEENVIDMGPEWRAFDASQREKRARVGA
PESILLHDKGLSTDIGIDRNLSGLMREKMYRLRKWQSRLRVSDAAERNLAFALSELDRIA
SQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVIAACVYAACRLLKVPRTLDEIADISR
VDKKEIGRSFRFIARNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAVTILDEAYEKG
LTSGKSPAGLVAAALYIAGLLEDEKRTQREVAEVARVTEVTVRNRYKELVEKLNLKIPV
NT seq
900 nt
NT seq
+upstream
nt +downstream
nt
gtgagcaagcgtagggtctgcccggtttgtggctcaacggagttcatctacgacccgggt
aggggagaggtcgtctgtaaggtttgcggttacgttatcgaggagaacgtcatagatatg
ggtcccgagtggcgcgcctttgacgcgagccagagggagaagagggcgagagttggtgcc
cccgagagcattctcctccacgataagggtctctcaacagatattggaatcgacaggaac
ctttccggtttgatgcgtgagaagatgtaccgcctgaggaagtggcagagccgcctccgc
gtgagcgatgccgccgagcgtaacctggcctttgccctgagcgagctggatagaattgct
tcccagctcaagcttcccaggcacgtcgaggaggaagcggcaaggctctaccgtgaggcc
gtgagaaagggcctcataaggggacgctcgatcgagagcgttatagcagcgtgcgtctac
gccgcctgcaggctcctcaaggttccgaggaccctcgacgagatagccgacatatcccgc
gttgacaagaaggagataggcaggagcttccgcttcatagcgagaaacctcaacctcaca
ccgaagaagctcttcgtcaagccaaccgactacgtcaacaagttcgccgacgagctcgga
ctcagcgagaaggtcaggagaagggccgtgacgattctcgacgaggcctacgaaaagggc
ctcacgagcgggaagagccccgcaggcctggtcgcggccgcgctatacatagcgggcctt
ctcgaggacgagaagagaacccagagggaggtcgcagaggtcgcgcgcgtcaccgaggtc
accgtgaggaacaggtataaggaactcgtcgagaaactcaacctgaagattccggtttga
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