Thermococcus sp. 5-4: CDI07_08420
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Entry
CDI07_08420 CDS
T05088
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K00557
tRNA (uracil-5-)-methyltransferase [EC:
2.1.1.35
]
Organism
thh
Thermococcus sp. 5-4
Brite
KEGG Orthology (KO) [BR:
thh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
thh03016
]
CDI07_08420
Enzymes [BR:
thh01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.35 tRNA (uracil54-C5)-methyltransferase
CDI07_08420
Transfer RNA biogenesis [BR:
thh03016
]
Prokaryotic type
tRNA modification factors
Methyltransferases
CDI07_08420
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
PabTrmU54_TRAM_dom
MTS
TRM5-TYW2_MTfase
Methyltransf_31
TehB
Cons_hypoth95
Methyltransf_25
PrmA
Methyltransf_23
Methyltransf_15
N6_N4_Mtase
Motif
Other DBs
NCBI-ProteinID:
ASA78317
UniProt:
A0A1Z2TPG5
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Position
complement(1522279..1523532)
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AA seq
417 aa
AA seq
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MRGVVERLDLEGLGVVRLGKKEIHVPFTAPGDVVEVRRWWRRKRTLIATDFDVVEPSLNR
TEPKCPYFGTCGGCLLQHIPYTEQVRFKSDKLSKILGFDVEVIPSPRIYGHRNRIDVVIS
TRGIGFRRRGTWWDAVDIEWCPVFGESSGRVLRSLREFIEDFRPSLYEIRGNKGFLRYIV
IREGKFTGELMVNLVTSEGELPQEFPEYFDYATSVYWSVNRTPSDVSYGEIERFWGSEFI
RERLEDVTYLIHPNSFFQTNSHQAVALVRKVAELVDGGKVLDLYSGVGTFGIYLAKRGFD
VEGIEVNPFAVEMANRNVELNGVDATFRVGEDKDVENLSEYETIIVDPPRAGLHPKLIKK
ILKDKPQSIVYVSCNPKTLKANLDELAGIYSLETAVGIDMFPHTPHVETVVKLKLKV
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgcggggagtcgtcgaaaggcttgacctggaaggtctgggcgttgtgaggctggggaaa
aaagaaattcacgtcccgttcaccgcaccgggtgacgtcgtggaagtcaggagatggtgg
aggaggaagagaacgctcatagccacggattttgacgtcgtggagccctccctaaacaga
accgagcccaaatgcccctactttggaacgtgcggtggttgcctcctccagcacattccc
tacacggagcaggttaggtttaaatccgacaagttatccaagattttgggctttgatgtc
gaggttatcccctccccccggatatacggtcatagaaatcgcattgatgttgtcatttcg
acgagaggaataggcttcagaaggcgcggcacctggtgggacgctgttgacatcgagtgg
tgccccgtcttcggcgagtccagcggaagggtcctccgctcccttagggagttcatcgag
gacttcagaccgagcctctacgagatacgggggaacaagggcttcctcaggtatatcgtc
atccgcgagggcaagttcacgggcgagctgatggttaacctagttacctcggagggcgag
ctcccccaggagttcccggagtacttcgactacgcgacctccgtctactggagcgtcaac
agaacccccagcgacgtctcctacggtgagatagagcgcttctggggaagcgagttcata
agggagaggctcgaggacgtgacctacctgatacatcccaacagcttcttccagacgaac
agccaccaggccgtagcgctggttaggaaggtggccgagctggtcgacggtgggaaagtc
ctcgacctgtactccggcgttgggaccttcggcatctacctcgccaagaggggtttcgac
gtggagggaatcgaggtcaaccccttcgcggtggagatggcaaacagaaacgtcgagctg
aacggtgtcgatgcgaccttcagggtcggcgaggacaaggacgtcgaaaatctttcggaa
tacgagacgataatcgttgatccgccaagggcggggttgcatcccaaactgataaagaaa
atcttaaaagacaaaccgcaaagcatcgtttacgtctcctgcaatccaaagaccctcaag
gccaacctcgatgaactggcggggatttactctctagaaaccgcggtgggaattgacatg
ttcccgcacacgccccacgtggagacggttgtcaaacttaaactcaaggtttaa
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