Thiomonas arsenitoxydans: THI_0880
Help
Entry
THI_0880 CDS
T02347
Symbol
rhlE
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
thi
Thiomonas arsenitoxydans
Pathway
thi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THI_0880 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thi03019
]
THI_0880 (rhlE)
Enzymes [BR:
thi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
THI_0880 (rhlE)
Messenger RNA biogenesis [BR:
thi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
THI_0880 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
P-loop_SecA
Motif
Other DBs
NCBI-ProteinID:
CAZ87585
UniProt:
D6CS57
LinkDB
All DBs
Position
complement(880890..882356)
Genome browser
AA seq
488 aa
AA seq
DB search
MNTTTTPTEDTPQPERFSDLALDARILRAVSDMGYEKLTPIQAKAIPLLLDGRDIMGAAQ
TGTGKTAAFSLPILQQLLPLASTSVSPARHPVRALMLAPTRELADQVYTNLKAYAKHTPL
RCACVFGGMDMAPQKAELRTGVDLLVATPGRLLDHLEAKTVNLGQVQFVVLDEADRMLDI
GFLPDLQRILGFLPKQRTTLLFSATFSTEIKRLAQSYLQNPLLVEVARPNATATNVEQRV
YQVEEDDKRATLVQLLRDNPLPQVIVFVNSRLGAGRLTRLLERDGIKAAAMHGDKSQAER
LTTLEAFKRGEIQALVATDVAARGLDIAELPGVVNYDVPFSAEDYVHRIGRTGRAGASGL
AITLATARDARSLADIEKLIKRQFEKQTVSLERAPRPRRDADETREHRIARAPRALPSDT
GASAPVTARVSRSSRQDPWFDKPYEADPNAQPVWEAASASPGSGVRSTSSNIRPRRKIAA
LLGGSDPK
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgaacaccacgacaaccccgaccgaagacactcctcagcctgaacgcttttccgacctg
gcgctggacgcgcgcattctgcgcgccgtcagcgatatgggctacgaaaaactcacaccc
atccaggccaaggccattccgctgctgctggatgggcgcgacatcatgggcgccgcgcag
accggcaccggcaagaccgccgcgttctccctgcccatcctgcagcagctcttgccgctg
gcgtcgaccagcgtttctccggcgcgccacccggtgcgcgcgctgatgctggcacccacg
cgcgagctggccgatcaggtctacaccaatctcaaggcctatgccaagcacacgccgctg
cgttgcgcctgcgtgttcggcggcatggacatggcgccgcagaaggccgagctgcgcacc
ggagtcgatctgttggtggccacgcccgggcgcctgctcgaccacctcgaagccaagacc
gtcaacctgggccaggtgcaattcgtggtgctcgacgaggccgaccgcatgctcgacatc
ggcttcctgcccgacctgcagcgcatcctcggctttttgcccaaacagcgcaccaccctg
ctgttctcggccacgttctccacagagatcaagcgactggcgcagagctatttgcaaaac
ccgctgctggtcgaagtggcccgccccaacgcgaccgcgaccaatgtggagcagcgcgtc
tatcaggtggaagaagacgacaagcgggccaccctggtgcaactgctgcgcgacaacccg
ctgccgcaggtcatcgtgttcgtcaacagccgcctcggcgccggccgactgacccgcttg
ctggagcgcgacggcatcaaggccgcggccatgcacggcgacaaatcgcaggccgaacgc
cttaccacgctggaggccttcaagcgcggcgagattcaggcgctggtcgccaccgatgtg
gccgcgcgcggactcgacattgccgaactacccggtgtggtgaattacgacgtgcccttc
agcgccgaagactatgtgcaccgcatcggccgcacgggtcgcgccggcgcctccggcctg
gccattaccctggcaacggcgcgcgacgcgcgctctctggccgatattgagaagctgatc
aagcgtcagtttgaaaagcagaccgtatcgctagagcgcgcgcctcggccgcgccgcgat
gcggacgagacgcgggaacatcgcatcgcgcgtgcgcctcgtgcactgccgagcgacacc
ggcgcctcggcgccggtgactgcacgcgtttcacgatcctcgcggcaggatccgtggttc
gacaaaccctacgaagccgacccgaatgcccagccggtttgggaggccgcatcagcttca
cccggaagcggcgtgcgctcgacgtcctcgaacattcgcccgcgacgcaaaatcgccgcc
ctgctgggcggaagcgatccgaaataa
DBGET
integrated database retrieval system
