Thiomonas arsenitoxydans: THI_1351
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Entry
THI_1351 CDS
T02347
Name
(GenBank) putative ATP-dependent RNA helicase hrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
thi
Thiomonas arsenitoxydans
Brite
KEGG Orthology (KO) [BR:
thi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thi03019
]
THI_1351
Enzymes [BR:
thi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
THI_1351
Messenger RNA biogenesis [BR:
thi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
THI_1351
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
AAA_30
AAA_19
NACHT
AAA_25
T2SSE
FtsK_SpoIIIE
SRP54
PhoH
Motif
Other DBs
NCBI-ProteinID:
CAZ88039
UniProt:
D6CPV9
LinkDB
All DBs
Position
1338015..1342016
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AA seq
1333 aa
AA seq
DB search
MPESTAARPPRQRHAAAPRKPVAATPVGEVRFPEDLPVSLRREDIARALREHQVVIVCGE
TGSGKTTQLPKIALSIGRGLGAGGTGLIGHTQPRRLAATSIAKRVAQELGSELGAIAGYK
VRFNDRLQPGASIKLMTDGILLAETQTDPLLRAYDTLIIDEAHERSLNIDVLLGYLKQLL
PRRPDLKVIVTSATIDAQRFAEHFAESAPRPAPGRPKPGGAPSGGSDGAQPGAWGQSTLA
PVIEVSGRLYPVEVRWRPFGVDKGDDRDQSAAICDAVDELWRLGSGDILVFLPGEREIRE
AEAALRKHHLDTKRVGVEILPLYARLSQAEQDRVFASGGARRIVLATNVAETSLTVPGIR
YVIDAGLARVKRYSYRNKVEMLQVESISQAAAQQRAGRCGRVANGVCIRLYDEAEFAERP
RFTTPEIQRSSLAAVILRMKALGLDSIEQFPFIEPPPGKAIADGYQLLTELGAVDDRNAL
TPLGRELARLPLDPRIGRMILEARNREALTEVLIIAAALSVQDPRERPAEAQQAADEAHR
KFSDERSEFLGWLKLWAHYHAAIAHKKSQRKLWGELRGQYLSPLRLREWHDVHSQLHTLV
SEQGWRLNTAEPTYEQIHCALLSGLLGNVGYKGEDDAQYLGARGIRFAIHPSSPLGRKAG
RWIMAAELVETTRLYARGVARIEPQWLERVGAHLLKTSLLDPHWEKKPAQVTAFERATLY
GLVVYSQRRVDFGRFDPKQAREIFLREALVAGEWDCRWPFFQHNQALIADIERLEHKARR
LDVLVDEELIYAFYDQQVPDEVHGGASFDRWYRDAVRAEPKLLFLQRDELMRHEAAGITT
ETFPNRLKLGALELQLDYTFDPGGARDGVTLQAPLAALNQIPAQRLQWLVPGLLKEKILA
LLKSLPQRPRSRLVPLPQTAEAFAAQLTTAERFGQGDLLDALRDLVREHTGLALQRTDFK
LETLGPHLFFNVQVIDAHGRRIDVGRDIDKLRADHGQASRSAFAELAKLRTGLSPQKNAK
APSEAPAPPRAAPGALAAAPREAPINVPTDALQGLTDWTFDALPELLELRRGAHTLIGFP
ALVDKGGAVDVEVFDTAEEAARLHRSGLRRLFALQLRDQIKHAEKNLPGFQQAAMQFMSL
GTAELLRAQIVDAALDRAFLVEPLPADKPAFAQRLSEGKPRFQLLAAEMARLAAQILDEY
AQVQKKLAAFKNQPALHADIRAQLQALLPPRFIAEAPPAQIAHFPRYLQAIGRRLDKFRT
DPARDAQLGTQLAPWLTRWQREAASYHGHLPPRLQELRWLLEELRVSLFAQELRTPMPVS
LKRLEKVWAQWQG
NT seq
4002 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaatccaccgccgcccgaccccctcgccagcgccatgctgccgcgccgcgcaag
cctgtggcggccacgcccgtgggcgaagtgcgctttcctgaagatctgccggtttcgctg
cggcgcgaagacatcgcgcgtgcgctgcgcgagcatcaggtggtgatcgtctgcggcgaa
accggatcgggcaagaccacacagttgcccaagatcgcgctgtccatcggccgcgggcta
ggagcgggcggaacggggctgatcggccacacccagccgcggcggctggcggccaccagt
atcgccaagcgcgtggcgcaggaactcggcagcgagctgggcgcgattgccggatacaag
gtgcgcttcaacgaccggctgcagcccggggcgtcgatcaagctgatgactgacggcatt
ttgctggcggaaacccagaccgaccctctgctgcgcgcctacgacaccctgatcatcgac
gaggcgcacgagcgcagcctgaacatcgacgttctgctgggttacctcaaacagttgctg
ccgcgccgtcctgacctgaaagtgatcgtgacttcggccactatcgatgctcagcggttt
gcggagcactttgccgaaagcgctccccgcccggcgccgggccgccccaagccgggcggc
gccccctcggggggcagcgacggggcgcagcccggagcgtgggggcagtccactcttgct
ccagtcatcgaagtttcggggcggctgtatccggtggaagtgcgctggcggccttttggc
gtggacaagggtgatgaccgcgaccagtctgcggcgatctgcgatgcggtggacgagctt
tggcggctcggctccggcgacattctggtgtttctgcctggcgagcgcgaaatccgcgaa
gccgaggcggcgctgcgcaaacaccatctcgacaccaagcgcgtcggcgtggaaatcctg
ccgctgtacgcccggctgtcgcaggccgagcaagaccgggtgtttgcctcgggcggtgcg
cggcgcatcgtgctggcaaccaatgtggccgaaacctcgctcaccgtgcctggcatccgc
tacgtcatcgacgctggtctggcgcgggtaaagcgctacagctaccgcaacaaggtggaa
atgctgcaggtcgagtccatcagccaggcggcggcgcagcaacgcgccggccgttgcggc
cgggtggccaacggcgtgtgcatccggctgtacgacgaagccgagttcgccgagcggccg
cgcttcaccacgccggagatccagcggtcttcgctggccgccgtcattctgcgcatgaag
gcgctggggctggattccatcgagcagtttccgttcatcgagccgccgccgggcaaggcg
attgccgacggctaccagttgctcaccgaactgggcgcggtggacgaccgcaatgcgctc
acccctctgggccgcgagcttgcccgactgccgctggacccgcgtatcggccgcatgatt
ctcgaagcccgcaaccgcgaggcgctgaccgaagtgctgatcatcgccgcggcgctgtcg
gtgcaagacccgcgcgaacgtcccgccgaggcgcagcaggcagccgatgaagcgcatcgc
aagttcagcgacgagcgctccgaatttctcggctggctcaagctctgggcgcattaccac
gcggccattgcccacaaaaagtcgcagcgcaaattgtggggcgaactgcgtggccagtat
ctctcgccgctgcgcctgcgcgaatggcatgacgtgcacagccagctccacactctggtg
tccgagcagggctggcggctcaacaccgccgagcctacctatgagcagattcattgcgct
ttgctcagcggcctgctcggcaacgtgggctacaagggcgaagacgatgcccagtaccta
ggcgcgagaggcattcgctttgccatccatccgtcgtcgccgctggggcgcaaggccggg
cggtggatcatggcggcggagctggtggaaaccacgcggctgtacgcccgcggcgtggcg
cgcatcgagccgcagtggctggagcgcgtgggcgcgcacctgctcaagaccagcctgctc
gatccgcactgggaaaagaagccagcgcaagtcaccgccttcgagcgcgcgacgctgtac
ggactggtggtttacagccagagacgggtggatttcggccgtttcgatcccaagcaggcg
cgcgagatttttctgcgcgaggccctggtggcgggcgagtgggactgccgctggcccttt
tttcagcacaaccaggcgctgatcgccgacatcgaacgactcgaacacaaggcgcggcgg
ctcgacgtgctggtggacgaagaactgatctacgccttctacgaccagcaagtgccagac
gaagtgcacggcggcgccagtttcgaccgctggtatcgcgatgcggtgcgggccgagccg
aagctgctgtttctgcagcgcgacgagttgatgcgccacgaagcggccggcatcaccacc
gagacgtttcctaaccgccttaagctcggcgcgctggaactgcagctcgactacaccttc
gaccccggcggcgcgcgcgacggcgtcacattgcaggcgccgctggccgcgctcaaccag
atacctgcgcagcggctgcaatggctggtgccggggctgctcaaggaaaagattctggcg
ctgctcaaaagcttgccgcagcgcccgcgttcgcgcctcgtgccgctgccgcaaaccgcg
gaggcgttcgccgcgcagctcacgacggccgagcgattcggccagggcgatctgctcgac
gccttgcgcgatctggtgcgcgagcacaccgggctggcgctgcagcgcaccgacttcaag
ctcgaaaccctcgggccccatctgtttttcaacgtgcaggtgatcgacgcccacggacgg
cgcatcgacgtcgggcgagacatcgacaaactgcgcgccgatcacggtcaggcttcacgc
agcgcgtttgccgaactggccaaactgcgcaccggactgtcgccgcaaaaaaacgccaag
gccccgtccgaagccccggcgcctccccgcgcggcgcccggcgcgttggccgcagcaccg
cgcgaagcgcccatcaatgtgcccaccgatgcgctgcaaggactgacggattggactttc
gacgccctgccggaactgctggagctgcgccggggcgcgcacaccctgatcggctttccc
gccctggtggacaagggcggcgcggtcgatgtggaggtattcgacaccgccgaggaagcc
gcacggttgcaccgtagcggcctgcgccgtctgttcgccctgcaactgcgcgatcagatc
aagcatgcggaaaaaaatctgcccggattccagcaggcggcgatgcagttcatgtcgctg
ggcaccgccgaactgctgcgcgcgcagatcgtggatgcggcgctcgaccgggcctttctc
gtcgagccgctgcctgccgacaagcccgctttcgcccaacgcttgagcgagggcaagccc
cgttttcaactgttggccgccgaaatggcgcggctggcggcgcagattctggatgaatac
gcgcaagtgcagaaaaaactcgccgcgttcaagaaccaacccgcgctgcacgccgacatc
cgtgcccagctgcaggccttgttgcctccgcgtttcatcgccgaagcgccgcctgcgcaa
atcgcgcactttccccgctatctgcaggccatcgggcggcggctggataaatttcgcacc
gatccggcccgcgatgcgcaactcggcacccagctcgccccttggctcacccgctggcag
cgcgaggcggcgagttatcacgggcacctgccgccacgcctgcaagagctgcgttggctg
ctcgaagaactgcgggtgtcgctgttcgcccaagagctgcgcacgcccatgccggtatcg
ctcaagcgtctggaaaaagtctgggcgcagtggcagggctga
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integrated database retrieval system
