Thiomonas arsenitoxydans: THI_2165
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Entry
THI_2165 CDS
T02347
Symbol
rho
Name
(GenBank) Transcription termination factor rho (ATP-dependent helicase rho)
KO
K03628
transcription termination factor Rho
Organism
thi
Thiomonas arsenitoxydans
Pathway
thi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THI_2165 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
thi03021
]
THI_2165 (rho)
03019 Messenger RNA biogenesis [BR:
thi03019
]
THI_2165 (rho)
Transcription machinery [BR:
thi03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
THI_2165 (rho)
Messenger RNA biogenesis [BR:
thi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
THI_2165 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
AAA_22
S1CSD-TOTE-2
OB_RNB
NACHT
AAA
AAA_5
Motif
Other DBs
NCBI-ProteinID:
CAZ88816
UniProt:
D6CU47
LinkDB
All DBs
Position
2121012..2122274
Genome browser
AA seq
420 aa
AA seq
DB search
MHLSELKATHVSKLLEMAQSFEIENASRLRKQELMFAILKKHARTGEQVFGDGCLEVLPD
GFGFLRAPESSYMASPDDIYISPSQIRRFNLHTGDSIEGEVRVPKDGERYFALVKVDRVN
GVTPEENKNKIMFENLTPLFPTEHMRLERDIKGEENIIGRVIDIVAPIGKGQRGLLVAPP
KSGKTVMLQALAHAITNNHPEVVLIVLLIDERPEEVTEMQRSVRGEVVSSTFDEPAVRHV
QVAEMVIEKAKRLVELKKDVVILLDSITRLARAYNTVIPTSGKILTGGVDANALQRPKRF
FGAARNIEEGGSLTIIGTALVDTGSRMDEVIYEEFKGTGNMEIHLDRRLSEKRVYPAMLI
NRSGTRREELLLKPEILQKAWILRKLLYPMDEIQAMEFLLDKMKQTKNNAEFFDLMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgcatctgtccgaactcaaagcgacgcacgtctccaagctgcttgaaatggcgcagtcg
ttcgagattgaaaacgccagccgcctgcgcaagcaggaactgatgtttgccatcctcaaa
aagcacgcccgcactggcgagcaggtgttcggcgacggctgccttgaagttctgccagac
ggcttcggctttctgcgggcgcccgagtcgagctatatggcgtcacccgacgacatctac
atctcgcccagccagatccgccgtttcaatctgcacactggcgactccatcgagggtgag
gtacgtgtacccaaggatggcgagcgttactttgctttggtgaaggtcgaccgcgtcaac
ggcgtgacccctgaggagaacaagaacaagatcatgttcgagaacctcacgccgctgttc
cccacggagcacatgcgtctggagcgcgacatcaagggggaagagaacatcatcggccgt
gtgatcgacatcgtggccccgatcggcaaggggcagcgcggcctgctggtcgccccgccc
aaaagcggcaagaccgtgatgctgcaggcgcttgcgcatgccatcaccaacaatcatcct
gaagtggtgctcatcgtgctgttgatcgacgagcgcccggaagaagtgactgaaatgcag
cgctcggtgcggggagaagtggtcagttccactttcgacgagcccgccgtgcggcacgtg
caggtcgccgaaatggtgatcgaaaaggccaagcgtctggtagaactgaaaaaagatgtg
gtcattctgctcgactccatcactcgcttggcgcgggcatacaacaccgtcattccaacc
tccggcaagattttgaccggtggggtcgatgccaacgccctgcaacgccccaagcgcttt
tttggcgcggcacgcaatatcgaagagggtggatcgctgaccatcatcggcaccgcgctg
gtcgatactggcagccgcatggacgaagtgatctacgaagaattcaagggcaccggcaat
atggaaatccatctggatcgccgtctgtcggagaagcgcgtttatcccgccatgctcatc
aaccgctcgggcacacgccgcgaggaactgctgctcaagcctgaaatcctgcaaaaagcc
tggattctgcgcaagctgctctatcccatggacgagattcaggcgatggaatttctgctc
gataagatgaagcagaccaagaacaacgccgaattcttcgatctgatgcgccgaggcggt
tga
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