Thiomonas arsenitoxydans: THI_2644
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Entry
THI_2644 CDS
T02347
Symbol
pnp
Name
(GenBank) Polyribonucleotide nucleotidyltransferase (Polynucleotide phosphorylase) (PNPase)
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
thi
Thiomonas arsenitoxydans
Pathway
thi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THI_2644 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thi03019
]
THI_2644 (pnp)
03016 Transfer RNA biogenesis [BR:
thi03016
]
THI_2644 (pnp)
Enzymes [BR:
thi01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
THI_2644 (pnp)
Messenger RNA biogenesis [BR:
thi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
THI_2644 (pnp)
Transfer RNA biogenesis [BR:
thi03016
]
Prokaryotic type
tRNA degradation factors
THI_2644 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
KH_1
S1_RRP5
OB_RRP5_4th
KH_2
KH_KhpA-B
aRib
DUF5813
Motif
Other DBs
NCBI-ProteinID:
CAZ89260
UniProt:
D6CVE1
LinkDB
All DBs
Position
complement(2596549..2598708)
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AA seq
719 aa
AA seq
DB search
MFNKVVKTFQWGRHQVTMETGEIARQASGAVLLNMDDTVVLATVVGARTAKAGQDFFPLT
VDYIEKTYAAGRIPGGFFKREGRPSENETLTSRLIDRPIRPLFPEGFFNEVQVVVHVLSI
NPEVEADIPALLASSAALAVSGLPFNGPVGAARVGYVNGNYVLNPSRAELADSRLELVVA
GTESAVLMVESEADQLSEEVMLEAVMFGHAQFQTAINAIHELVRDGGKPAWDWAAPEKDQ
ALIDRIQALAGDDIRAAYKITQKQARTQALREAAAKVHAGLAEAGIAADAAKVDGILFDM
EARIVRDQILAGEPRIDGRDTRTVRPLSIRTSVLPRTHGSALFTRGETQALAVATLGTDQ
DAQIIDALGGEYRDRFLLHYNMPPFATGETGRVGTPKRREIGHGRLAKRALLAVLPKKED
FAYTMRVVSEVTESNGSSSMASVCGGCLALLDAGVPLKAHVAGIAMGLIKEGNRFAVLTD
ILGDEDHLGDMDFKVAGSASGVTALQMDIKIQGITREIMQVALAQAREARMHILGVMQQA
VGGAREEVSQFAPRLYTLKINPERIRDVIGKGGATIRALTEETGTQINIGEDGTITIAST
DADKATIAKQRIIDLTAEVEVGQVYDGAVVKILDFGALVNVLPGKDGLLHISQIANERIN
KVSDFLQEGQKVRVKVIETDDKGRFRLSIKALLGEDSSSAPAQPVVAPAAAEADLEPGV
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacaaagtcgtcaaaaccttccagtggggacgccatcaagtcacgatggaaacg
ggcgagattgcgcgccaggccagcggtgcggtgctgctcaatatggacgataccgtggtg
ctcgccacggtggtgggcgcgcgtacggccaaggcggggcaggattttttccccctgacc
gtcgattacatcgagaagacctatgcggcgggccgcattcccggtggctttttcaagcgg
gagggccgccccagcgaaaacgaaacgctgacctcgcgtttgatcgatcgcccgatccgc
cccttgtttcctgaggggtttttcaacgaggttcaggtggtggtgcatgtgctgtccatc
aacccggaggtcgaagccgatattccggccctgctggcttcgagcgccgcgctggcggtg
tcgggcttgccgttcaatggcccggtgggcgccgcccgcgtggggtatgtcaacggcaac
tatgtgctcaaccccagccgcgccgaactggccgacagtcgcctcgaactggtggtggcg
ggtacggaatcggccgtgctgatggtcgagagcgaggccgatcagttgtctgaagaggtc
atgctcgaagccgtgatgttcggccatgcgcagttccagacggcgatcaacgccatccac
gagttggtgcgcgatggcggcaaacccgcctgggactgggccgcgcccgagaaagatcag
gcgctgatcgaccgcattcaggcgctggctggtgacgatatccgcgccgcctacaaaatc
acccagaagcaggcgcgcacgcaggccttgcgcgaagcggcggccaaggtgcatgccggt
ttggccgaggcgggtatcgccgctgatgcggccaaggtcgacggcatcctgttcgacatg
gaagcgcgcatcgtgcgtgaccagattctcgcgggcgagccgcgcatcgatggtcgcgac
acccgcaccgtgcgtcctttgagcatccgtacttcggtgttgccgcgcacgcatggcagc
gcactgttcacccgcggtgaaacccaggctttggccgtggctacgctgggcaccgaccag
gatgcgcagatcatcgatgcgctgggcggcgaataccgcgaccgcttcctgctgcactac
aacatgccgccgttcgccacgggcgagacgggccgtgtgggcacgcccaagcgccgcgaa
atcggccatggtcgcctggccaagcgcgcgttgctggcggtgctgccgaaaaaagaagac
ttcgcctacaccatgcgcgtggtgtcggaagtaaccgagtccaacggctcttcgtccatg
gcctcggtgtgcggcggctgcctagcactgctcgacgccggtgtgccgctgaaggcgcat
gtggccggcatcgccatgggcctgatcaaggaaggcaaccgctttgcggtgttgaccgac
attctgggcgatgaagatcacctcggcgacatggacttcaaggtggcgggttcggcttcg
ggcgtgaccgcgctgcagatggacatcaagattcagggcatcacccgcgagatcatgcag
gtggcgctggcacaagcgcgcgaagcccgcatgcacatcctgggcgtcatgcagcaggca
gtcggcggtgcgcgtgaagaggtttcgcagttcgcgccgcgtctctacaccctgaagatc
aatcccgagcgcatccgcgatgtcatcggcaagggcggcgccaccattcgtgcgctcacc
gaagaaaccggcacgcagatcaacatcggcgaggacggcaccatcaccatcgcctcgacc
gacgccgacaaggccactatcgccaagcagcgcatcatcgacctcactgccgaagtggaa
gtcggtcaggtgtatgacggcgccgtggtcaagattctcgatttcggcgccctggtgaac
gtgctgccgggcaaggatggtctgctgcacatctcgcagatcgccaacgagcgcatcaac
aaggtgagcgacttcctgcaagagggccagaaggttcgcgtcaaggtcatcgaaaccgat
gacaagggccgcttccgtctgtcgatcaaggcactgctgggtgaggattcctcctcagcg
cctgcgcagccggtcgtggcacccgctgccgccgaggccgaccttgagccgggcgtctga
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