Thiomonas arsenitoxydans: THI_2796
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Entry
THI_2796 CDS
T02347
Symbol
rne
Name
(GenBank) Ribonuclease E (RNase E)
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
thi
Thiomonas arsenitoxydans
Pathway
thi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
THI_2796 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thi03019
]
THI_2796 (rne)
03009 Ribosome biogenesis [BR:
thi03009
]
THI_2796 (rne)
Enzymes [BR:
thi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
THI_2796 (rne)
Messenger RNA biogenesis [BR:
thi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
THI_2796 (rne)
Ribosome biogenesis [BR:
thi03009
]
Prokaryotic type
rRNA processing factors
THI_2796 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
CAZ89407
UniProt:
D6CLH9
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All DBs
Position
2739530..2742559
Genome browser
AA seq
1009 aa
AA seq
DB search
MKRMLFNATQSEELRVAIVDGQKLLDIDIEQAGREQRKGNIYKAVVTRVEPSLEACFVDY
GEERHGFLPFKEISRQYFKEGVSPSQARIQDVITEGQQLLVQVEKEERGNKGAALTTIIS
LAGRYLVLMPNNPRGGGVSRRIEGEDRQELRETMDQLQHPEGMSLIARTAGIGRSAEELQ
WDLNYLLKLWSAVRDASETQKGAFLIYQESSLVIRAIRDYFTSDIGEILIDTEDVFEQAR
QFMLHVMPDTVDRVKRYRDDLPLFSRFQIEQQIETAYSRTVNLPAGGAIVIDHTEALVAV
DVNSARSTRGNAIEDTALRTNLEAADEVARQMRLRDLGGLIVVDFIDMEEPRNQRAVEDR
LRDAMRQDRARVQVSKISKFGLLELSRQRLRPALSEGAYVTCPRCNGTGHIRDTESSALQ
ILRIIQEEAMKEGTAAVHVQVPVEVASFLLNEKRAEITKIELRQRLSVLLIPNKHLDTPN
YKLERLKHDDPRLDNLPTSYKMADEAEEDTAITRREKEQRPRQEALVRGITPEGPAPVMP
APAADEAPAPAPAPAVATPAAAPAAAATAGGGLFGWVKRLFSAEPQPSAAVQEPPVAAQP
ATPALTKADGQGGRGARTASGQNGNRRRGGRDRQREGQGENRQRGNPAVGTQPAEAAETA
AGETTNPRNRPPRGQQSQAERSERPKRERDPEEAAARKERAQAVPEQTRAPGEESATDTA
ERSSERASGSGRGGNRRPRREPVEAAPEAELIDAQALETQAEGDTEATPALTEGRGDEAQ
TERKSRNRRGRGRRGGRREGAAADENGNLSAEANEAVTDADADETAGRSFGSLAAPLALG
AVEAPAAPALEDQTPLILIRIDAPADLALEAAQPAPRPVARPSEEAPLAAPDSPPAAAES
SSLIVTAVEKATVATTSAAEPAPAQAAAAYVLPVDALQATAQAAGLQWVQSNADAIRRVQ
EELAAQPAPIHVPRERKPAPKLDDGPLILVETARPLPTLQLPENNPPAH
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
atgaaacgcatgttgttcaacgccacgcagtcggaagaattgcgcgtggccatcgtcgat
ggacagaaacttctcgacatcgatatcgaacaggccgggcgcgagcagcgcaagggcaat
atctacaaggccgtcgtcacccgcgtcgagccctcgctcgaagcctgtttcgtcgattac
ggcgaagagcgccacggctttctgccgttcaaggaaatttcgcgccagtacttcaaggag
ggcgtttccccctcccaggcgcgcattcaggacgtgatcaccgaaggccagcaactgctg
gtgcaggtggaaaaagaagagcgcggcaacaagggcgcggcgctgaccaccatcatctcg
ctggccgggcgctatctggtactcatgcccaacaatccgcgcggcggtggcgtgagccgt
cgcatcgaaggcgaagaccgccaggaattgcgcgagacgatggaccagctccagcatccc
gaaggcatgagcctgatcgcccgcaccgcaggcatcggccgcagcgcagaagaattgcaa
tgggacttgaattacctgctcaaactctggagcgccgtgcgcgacgcttcggagacgcaa
aagggcgccttcctgatctatcaggaatcttcgctggtcatccgcgccatccgcgactac
ttcaccagtgacatcggcgaaattctgatcgacaccgaagacgtgttcgagcaggcacgg
cagttcatgctgcacgtcatgcccgacacggtcgaccgcgtcaagcgctaccgcgacgat
ctgccgctgttctcgcgctttcagattgagcagcagatcgaaaccgcctattcgcgcacg
gtcaacctgccggccggcggcgccatcgtcatcgaccacaccgaagcgctggtggcggtg
gacgtcaactccgcacgctccacgcgcggcaatgccatcgaagacaccgctctgcgcacc
aacctcgaagccgccgacgaagtcgcccgccagatgcggctgcgcgaccttggcggcctg
atcgtggtcgacttcatcgacatggaagagccgcgcaaccagcgcgcggtcgaagaccgc
ctgcgcgacgccatgcgccaagaccgcgcccgcgtgcaggtgagcaagatttccaagttc
ggcctgctcgaactctcgcgccaacgcctgcgccccgccctgtcggaaggcgcttacgtg
acctgcccgcgctgcaatggcaccggccacatccgcgataccgaatcgagcgccctgcaa
atcctgcgcatcatccaggaagaggccatgaaggaaggcacggccgccgtgcacgtgcaa
gtgccagtggaagtcgcctccttcctgctcaacgaaaagcgcgccgagatcaccaaaatc
gaactgcgccagcgtctgtcggtgctgctgatccccaacaagcacctcgacacgcccaac
tacaagctcgaacgcctcaagcacgacgatccgcgcctggacaatctgcccaccagctac
aaaatggctgacgaggccgaagaagacacggccatcacacgtcgcgaaaaagaacagcgc
ccgcgtcaggaagccctggtgcgcggcatcaccccggaaggcccggccccggtcatgccc
gccccggctgccgacgaggctcccgcccccgcaccggccccggcggttgcaacccccgcc
gccgcgcctgctgctgccgcaacggctggcggcggtttgtttggctgggtcaagcgtctg
ttctccgccgaaccacaaccctccgctgccgtgcaagagccgccggttgcggcgcagcct
gccaccccggccctgaccaaggcggatgggcaaggcggccgcggcgcacgcacggcttcc
ggccaaaacggcaaccgccgtcgcggcggccgtgaccgccagcgcgaaggccagggcgaa
aaccgtcagcgcggcaacccggccgttggcacccaacccgccgaagccgccgaaaccgca
gcaggagaaaccaccaacccccgcaaccggccaccccgcggtcaacagagccaagccgaa
cgcagcgagcgccccaagcgcgagcgcgacccagaagaggccgcggcccgcaaggagcgc
gcgcaagccgtacctgagcaaacccgcgcacccggcgaagaatcggccacggatacggcc
gaacgctcctccgaacgtgcatccggaagcgggcgtggcggcaatcgccgcccgcgtcgt
gagcccgttgaagcggcgcccgaagccgaactgatcgatgctcaggcgcttgaaacccaa
gccgagggtgataccgaggcaaccccagccctgaccgaaggaaggggtgacgaagcgcag
accgagcgcaaatcgcgcaatcgccgcggtcgtggccgccgtggtggacgccgcgaaggc
gccgccgctgacgagaacggcaatctgagcgccgaagcgaacgaagccgttaccgatgcc
gatgcggacgaaacagcgggtcgcagcttcggctccctggccgcgccgctggctttgggc
gccgtcgaagcccccgccgcgcccgcgctggaagatcagacaccgctgatcctcatcagg
atcgacgccccggccgacctggccctggaggctgctcagcctgcccctcggcccgttgcc
cggccttccgaagaagcgccgctcgccgcgcccgactccccgcccgccgcagcagagtcg
tcctccctgatcgtcacagcggttgaaaaagccactgtggcaacgacgtccgcagccgag
cccgcacccgcacaggccgctgccgcctatgtgctgccggtcgatgctctgcaagcaacg
gcgcaagcagccgggctgcaatgggtgcagtccaatgctgacgccatccgccgcgtgcag
gaagaactggccgcgcaacccgcgcccattcatgtgccgcgcgaacgcaagcccgcgccc
aagctcgacgatggcccgctgattctggtggaaaccgctcgcccgctgcctacgctgcaa
ctgccggaaaacaatccgccggcgcattga
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