Thiohalobacter sp. COW1: TspCOW1_04650
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Entry
TspCOW1_04650 CDS
T08363
Symbol
ihfB
Name
(GenBank) integration host factor subunit beta
KO
K05788
integration host factor subunit beta
Organism
thic
Thiohalobacter sp. COW1
Brite
KEGG Orthology (KO) [BR:
thic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
thic03032
]
TspCOW1_04650 (ihfB)
03036 Chromosome and associated proteins [BR:
thic03036
]
TspCOW1_04650 (ihfB)
03400 DNA repair and recombination proteins [BR:
thic03400
]
TspCOW1_04650 (ihfB)
DNA replication proteins [BR:
thic03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
TspCOW1_04650 (ihfB)
Chromosome and associated proteins [BR:
thic03036
]
Prokaryotic type
Nucleoid associated proteins
IHF (integration host factor)
TspCOW1_04650 (ihfB)
DNA repair and recombination proteins [BR:
thic03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Facilitator
TspCOW1_04650 (ihfB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_2
TRIP13_N
HU-CCDC81_euk_1
Motif
Other DBs
NCBI-ProteinID:
BCO30362
LinkDB
All DBs
Position
516548..516868
Genome browser
AA seq
106 aa
AA seq
DB search
MTKSELIEILASKNSHLNYKDVELAVKSLLEQMSQSLATGQRIEIRGFGSFSLHYRPPRV
GRNPKTGEAVALSSKYVPHFKPGKEMRERVNESRATTPIKSSDNGN
NT seq
321 nt
NT seq
+upstream
nt +downstream
nt
atgacaaagtcagagctgatcgagattcttgccagcaagaacagccatctgaactacaag
gatgtggaactggcggtcaagagcctgctggagcagatgagtcagtccctggcgaccgga
cagcggatcgagatccgcggcttcggcagcttctccctgcactaccgcccgccccgcgtc
ggccgcaatcccaagaccggcgaggccgtggccctgtcctccaagtacgtcccccacttc
aagcccggcaaggaaatgcgtgaacgggtcaacgaatcccgcgcgaccactccgatcaaa
tccagcgacaacggcaactga
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integrated database retrieval system
