Thiohalobacter sp. COW1: TspCOW1_08300
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Entry
TspCOW1_08300 CDS
T08363
Name
(GenBank) hypothetical protein
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
thic
Thiohalobacter sp. COW1
Pathway
thic03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thic00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TspCOW1_08300
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thic03019
]
TspCOW1_08300
03009 Ribosome biogenesis [BR:
thic03009
]
TspCOW1_08300
Enzymes [BR:
thic01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
TspCOW1_08300
Messenger RNA biogenesis [BR:
thic03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
TspCOW1_08300
Ribosome biogenesis [BR:
thic03009
]
Prokaryotic type
rRNA processing factors
TspCOW1_08300
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
BCO30727
UniProt:
A0A7R7GJJ6
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All DBs
Position
891252..893816
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AA seq
854 aa
AA seq
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MLVNATQPEELRVAMVDGQKLYDLDIEVPSREQKKSNIYKGKITRVEPSLEAAFVDYGAD
RHGFLPLKEIARSYFSEQALSGDGRPSIKDAVREGQELVVQVEKEERGQKGAALTTFISL
AGRYLVLMPNNPRAGGVSRRIEGDDRSQVRDIMSELNIPDGMGLIVRTAGVGRSTEELQW
DLDYLLQLWSAIEGAANEGQAPFLIYQESNVIIRALRDYLRSDIGEIMIDDAQVFQRARE
FMELVMPHNLHKLKRYDDPVPLFSRYQIESQIESAFQRDVTLPSGGSIVIDHTEALLSID
INSARATKGSDIEETALNTNLEAADEVARQLRIRDLGGLIVIDFIDMSAAKHQREVENRL
KEALKMDRARVQVGRISRFGLLEMSRQRLRPSLGESSQIVCPRCNGHGTVRGVESLALSV
LRIVEENAMKEKTARVVALVPVEVATFLLNEKRKSLYEIEQRYKVNVMLIPTPSLETPNY
EVRRVRTDEVKGEQAVSSFELIPEESLEVAETGGETVTRRAEEPAVKMLVPSSPVPPPAA
EAPARPAAGGGQPGLLKRLWSNLFGTPEPAEETEAQEKPRKGAGDGGKGRQDSRGGRNGG
GRSRSAGGRSGGGRNKPKRQPQEAGGEKPAQDKSKGKPRSEEPRAEAKPEAKPEAKSEAK
PQAEGGAESGQARESRGSRGGRRGRRGGSGRRRSSSNRQRGESGQQQAQGDGQSEDKDNR
ASAPAAGGKGGDDQSRQDAGGQNQGQGGGGQVVEMKSSQERPPAEKADKPARGEGSGSDT
AAPPVAQDKPAPKPEQPAAAKAEQPVPKPEQPAAKPEQQSAPKPEQPAQAPKADRPAGDA
PASNDPAKVVGNKE
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atgctagtcaatgcaactcagcccgaagagttgcgcgtggccatggtcgatggccagaaa
ctctacgatctcgacatcgaggtcccctcccgcgagcagaaaaaatccaatatctacaag
ggtaagatcacccgtgtagagcccagtctggaagcggccttcgtcgattacggcgccgac
cgccacggctttctgccgctcaaggaaatcgcccgcagctacttctccgaacaagccctg
tccggcgacggccgccccagcatcaaggatgcggtcagggaaggtcaggagctggtggtg
caggtggagaaggaggagcgcggccagaagggtgcggcgctgaccaccttcatcagcctg
gccgggcgctacctggtactgatgccgaacaacccgcgcgccgggggcgtgtcgcgccgc
atcgagggcgacgaccgcagccaggtgcgcgacatcatgtccgagctgaacatccccgac
ggcatgggcctgatcgtgcgcaccgccggcgtgggccgctccaccgaggagttgcagtgg
gacctggactacctgctccagctctggagtgcgatcgagggcgccgccaacgagggccag
gccccgttcctgatctatcaggagagcaacgtcatcatccgggccctgcgcgactacctg
cgctcggacatcggcgagatcatgatcgacgacgcccaggtgtttcagcgggcgcgcgag
ttcatggaactcgtcatgccgcacaacctgcacaagctcaagcgctacgacgatccggtg
ccgctgttctcgcgctaccagatcgagagccagatcgagtcggccttccagcgtgacgtc
accctgccctcgggcggctccatcgtcatcgaccacaccgaggcgctgctgtccatcgac
atcaactcggcgcgcgccaccaagggcagcgacatcgaggagaccgcgctcaacaccaac
ctggaggcggccgacgaggtcgcccgccagctgcgcatccgcgacctgggcgggctgatc
gtcatcgacttcatcgacatgtccgcggccaagcatcagcgcgaggtggagaaccgcctc
aaggaagcgctgaagatggaccgcgcccgggtccaggtcggacgcatctcgcgcttcggc
ctgctggagatgtcgcgccagcgcctgcggccctcgctgggcgagtccagccagatcgtc
tgcccgcgctgcaacggccacggcacggtgcgcggggtggaatccctggccctgtcggtg
ctgcgcatcgtcgaggaaaacgccatgaaggagaagaccgcgcgcgtggtggcgctggtg
ccggtcgaggtggcgaccttcctgctcaacgagaagcgcaagtcgctgtacgagatcgag
cagcgctacaaggtcaacgtcatgctcatccccaccccgtcgctggagacgccgaactac
gaggtccgacgcgtgcgcaccgacgaggtcaagggcgagcaggccgtgtccagcttcgaa
ttgatcccggaagaaagcctggaagttgccgagaccggcggcgagaccgtgacccgccgg
gcggaagagccggccgtgaagatgctggtgccctcctccccggtgccgccgcccgctgct
gaggccccggcccgcccggcggccggcggtggtcagcccggtctgctcaagcggttgtgg
tcgaacctgttcggcaccccggaacccgccgaggagaccgaggcgcaggagaaaccgcgc
aagggcgccggtgacggcggcaagggacgtcaggacagccgcggcggccgcaacggcggc
ggtcgcagccgaagcgccggcggccgcagtggcggtgggcgtaacaagcccaaacgccag
ccgcaggaagccggcggcgagaagccggcccaggacaagagcaagggcaagcccaggagc
gaagaaccgcgggccgaagccaagccggaagcgaagcccgaagccaaaagcgaggccaaa
ccccaggccgagggcggtgccgagtcgggccaggcccgggagtcccgcggcagtcgtggc
ggccggcgcggccggcgcggcggcagcggtcgacgccgttcgagcagcaaccgccagcgt
ggtgagagcggccagcagcaggcccagggcgacggccagtccgaggacaaggacaaccgc
gcatcagccccggctgctggcggcaagggcggcgacgatcagtccaggcaggatgccggc
ggccagaatcagggtcagggcggcggcggtcaggtcgtggagatgaagtcatcccaggag
cggccgccggcggaaaaggccgacaagcccgcccggggtgaaggctccggcagtgacacc
gcagccccgcccgtcgcccaggacaagcccgccccgaagccggaacagcctgctgcagcg
aaggcggaacaaccggtcccgaaaccggaacagcccgcagccaagccggagcagcagtcc
gcgcccaagccggagcagccggcccaggctccgaaggccgacaggcccgcgggcgatgcc
ccggcgtcgaacgacccggccaaggtggtgggcaacaaggaatag
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