Thiohalobacter sp. COW1: TspCOW1_09100
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Entry
TspCOW1_09100 CDS
T08363
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
thic
Thiohalobacter sp. COW1
Brite
KEGG Orthology (KO) [BR:
thic00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
thic03016
]
TspCOW1_09100 (truB)
Enzymes [BR:
thic01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
TspCOW1_09100 (truB)
Transfer RNA biogenesis [BR:
thic03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
TspCOW1_09100 (truB)
Prokaryotic type
TspCOW1_09100 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
Motif
Other DBs
NCBI-ProteinID:
BCO30807
LinkDB
All DBs
Position
complement(979500..980417)
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AA seq
305 aa
AA seq
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MARHRPKGRNVNGILLLDKPTGITSNEALQSVKRLFKARKAGHTGSLDPLASGLLPICLG
EATKASGFLLDADKHYQVRCKLGEKTATGDAEGEVTETRPVEGIDAARLESVLAGFRGEI
VQIPPMYSAVKHQGQRLYKLARQGVEVEREPRHVTIHKLILESMDLPFFDLDVHCTKGTY
VRTLAEDIGEALGCGAHVAALRRLGVGPYDSEKMVTLEKLKELSEDGFEDLDALLLPIES
ALAQWPDVRLNDDAAYYVRQGQPVQVPHAPTSGWVRMYQNGDRFLGMGQILDDGRVAPRR
LMGAR
NT seq
918 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgtcatcgtcccaagggcagaaacgtcaacggcatcctgttgctggacaagccc
accggtatcacatccaacgaggcgttgcagagcgtcaaacgactgttcaaggcccgcaag
gccgggcataccggcagcctggatccgcttgccagcggcctgctgcccatctgtctgggc
gaggcgaccaaggcctcaggctttctgctggatgccgacaagcactatcaggtgcgctgc
aagctgggcgagaagaccgccaccggcgatgccgagggcgaggtgaccgagacccggccg
gtcgagggcatcgacgctgcccgccttgagtcagtgctggccggcttccgcggcgagatc
gtccagattccgcccatgtactcggccgtcaagcaccaggggcagcggctgtacaagctg
gcccgtcagggggtggaggtcgaacgtgaaccccggcatgtgaccattcacaagctgatc
ctcgaatcgatggatctgcccttcttcgacctcgatgtccactgcaccaagggcacctat
gtgcgcaccctggccgaggatatcggtgaggcgctcggctgcggcgcccacgtcgccgcc
ctgaggcgcctgggcgtggggccgtatgacagcgaaaaaatggtgactttggaaaagctt
aaggaactgtctgaagatggtttcgaggatctggacgcgctcctgctaccgatcgagagc
gccctggcccagtggccggatgtccggctcaatgacgatgccgcctactatgtgcgtcag
ggccagccggtgcaggtgccgcatgcccccaccagcggatgggtgcgcatgtaccagaat
ggcgaccgcttcctcggcatgggccagatcctggatgacggccgggtcgccccccgccgc
ttgatgggtgcccgctga
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