Thiohalobacter sp. COW1: TspCOW1_27500
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Entry
TspCOW1_27500 CDS
T08363
Symbol
mutM
Name
(GenBank) formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
thic
Thiohalobacter sp. COW1
Pathway
thic03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
thic00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
TspCOW1_27500 (mutM)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
thic03400
]
TspCOW1_27500 (mutM)
Enzymes [BR:
thic01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
TspCOW1_27500 (mutM)
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
TspCOW1_27500 (mutM)
DNA repair and recombination proteins [BR:
thic03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
TspCOW1_27500 (mutM)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
Zn_ribbon_IS1595
Zn_ribbon_SprT
Lar_restr_allev
Auto_anti-p27
Motif
Other DBs
NCBI-ProteinID:
BCO32647
UniProt:
A0A7R7GN27
LinkDB
All DBs
Position
complement(2923036..2923851)
Genome browser
AA seq
271 aa
AA seq
DB search
MPELPEVETTRRGIEPHLTGRRIVRLAVRERRLRWPVPRGLETTVAGQRIHGVRRRAKYL
LIELDTGSLILHLGMSGALRILPTATPPDKHDHLDLELDDGQCLRLTDPRRFGALLWTTR
APESHKLLRELGPEPLSDEFNGEYLHALSRGRRAAVKSFIMDSHVVVGVGNIYANEALFL
AGIHPARAAGRISRQRYEQLAAAIKAVLEQSIRVGGTTLRDFTGSDGRPGYFRQSLRVYE
RAGRPCPVCGEAIRLKRIGQRSSYYCPHCQR
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgcctgaattacccgaagtcgagaccacacggcgtgggatcgaaccgcacctgaccggc
cggcgcatcgtccggctggcggtccgcgaacgccgcctgcgctggccggtgccgcgcggc
ctggagaccaccgtagcgggccagcgcatccacggcgtgcgccgccgcgccaaatacctg
ctcatcgaactcgataccggcagcctgatcctgcacctgggcatgtcgggcgcgctgcgc
atcctgcccacggcgacacccccggacaaacacgaccacctggatctggaactggacgac
ggccagtgcctgcgcctgaccgacccgcgccgcttcggcgccctgctctggaccacccgg
gcgccggagtcgcacaagctgctgcgcgaactcgggcccgagcccctgtccgatgaattc
aacggggagtatctccatgcgctgtcacgcggccgccgggcggcggtgaagagcttcatc
atggacagccatgtggtggtgggggtgggcaacatctacgccaacgaggcgctgtttctg
gccggtatccatccggcccgcgcggccggccgcatcagccgccagcgctatgaacaactg
gcagctgccatcaaggcggtgctggaacaatccatccgggtcggcggcacgacgctgcgg
gatttcaccggcagcgacggccggcccggttatttccgccagtcactgcgggtctatgag
cgcgcaggccggccctgcccggtctgcggcgaggcgatacggttgaaacgcatcggccag
cgctccagctattactgcccccattgccagaggtag
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