Thiomicrorhabdus sediminis: FE785_00125
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Entry
FE785_00125 CDS
T05983
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
thig
Thiomicrorhabdus sediminis
Pathway
thig03030
DNA replication
thig03410
Base excision repair
thig03420
Nucleotide excision repair
thig03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
thig00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FE785_00125 (polA)
03410 Base excision repair
FE785_00125 (polA)
03420 Nucleotide excision repair
FE785_00125 (polA)
03440 Homologous recombination
FE785_00125 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
thig03032
]
FE785_00125 (polA)
03400 DNA repair and recombination proteins [BR:
thig03400
]
FE785_00125 (polA)
Enzymes [BR:
thig01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FE785_00125 (polA)
DNA replication proteins [BR:
thig03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FE785_00125 (polA)
DNA repair and recombination proteins [BR:
thig03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
FE785_00125 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FE785_00125 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_pol_A_exo1
DNA_polI_exo1
Prok-E2_E
HHH_2
Shugoshin_N
Motif
Other DBs
NCBI-ProteinID:
QCU89144
UniProt:
A0A4P9K2S2
LinkDB
All DBs
Position
25219..28041
Genome browser
AA seq
940 aa
AA seq
DB search
MTESNSAITFNPDSPFILVDGSSYLFRAFHAMPPLTNSKGDATGAIFGVINMLGKLIEQY
QPEKMAVIFDAKGKTFRHDMYSEYKSHRPPMPEELASQIEPIHEIVKALGLPLICIEGVE
ADDVMGTLAHQASLVEHDTLISTGDKDLAQLVNEHVTLINTMNDTLSTPDSVVEKFGVRP
DQIIDYLALVGDSADNIPGIPKCGPKTAVKWLTSFGNIDNLMENAPMIGGKIGENLRNNL
DQLKLSRELTTIRLDCDLPIGLNDIQRQPADLQRLQELFSEYELRTWLNQVMKGETPFSK
SNGAKAHSQTVTKKSAQPDETNPVETTVAEKADSQYETVFSAEQFNKWLALIENTELFAI
DTETTSLNTQQAQVVGICLAVKNPDKAGNLACYIPLAHDYEGAPAQLDLNDTLNRLKPIL
ENPNVAKCGQNLKYDWHVLQNHGITLQGMKFDTMLESYCLNSVATRHNMDDLALKYLNHR
TTHFEEIAGKGKKQLTFNQIEIETAAHYAAEDADITLQLHQTLYPQLTAEQSLVNVFNDI
EMPLMPVLAHMERNGVLLDTEMLAKQSQEISAKLTELEQKAHLLAGENFNLNSSKQLQVI
LFENLELPIIKKTPKGQPSTAEPVLVELAEQGHEMPNLILEYRSLAKLKSTYTDSLPKQI
EQKSGRVHTSYQQAVASTGRLSSTEPNLQNIPIRSAEGRRIRQAFIARPGYKLIAADYSQ
IELRIMAHLSADNGLLTAFAEGRDIHQATAAEIFGVELNEVTTEQRRSAKAVNFGLIYGM
SAFGLAKQLNVPRGVAQEYIDLYFSRYPGVLEYMDRTKDFAKANGYVETLMGRRLYLPDI
NARNGQLRQYAERTAINAPMQGTAADIIKTAMIKIEAWLKDCEFDIQMIMQVHDELVFEV
KEDQIDAVRPHIKELMEGALKLDVPLIVEIGQGNNWDEAH
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atgaccgaatcaaattcagcaatcacctttaaccctgacagcccatttattttggtggac
ggttcttcttaccttttcagagccttccatgccatgccgccgctgacaaactctaaaggt
gatgcgacgggggcgatattcggtgtcatcaatatgctcggtaaactgattgaacagtac
cagccggaaaaaatggcggtgattttcgatgccaagggaaaaacctttcgccatgacatg
tatagcgaatataaatcgcaccgcccgccaatgccggaagaacttgcctcacaaatcgaa
ccgatccatgaaatcgtcaaagccttaggcctgccgctaatttgcatagaaggggtcgag
gccgatgatgtcatgggcaccttggcgcatcaagccagcctagttgagcacgataccttg
atttccaccggtgataaggacttggcacagctggtcaatgaacatgtcacgcttatcaac
accatgaacgacaccttatccactccggatagtgtcgtggaaaagttcggtgtgcgtccc
gaccagattatcgattacctggctctggtcggtgatagtgccgacaatatcccgggcatt
ccaaagtgcgggccgaaaaccgcggtcaaatggctgacctctttcggcaatatcgataat
ttgatggaaaatgcgccgatgatcggcgggaaaatcggtgaaaacctgcgcaacaacctc
gatcaacttaaattatcacgagaactgaccacaattcgccttgattgcgacctaccgatt
ggccttaatgatattcagcgtcagcccgctgatttgcagcgtttacaagaactattcagc
gaatatgagctacgcacctggttaaatcaggtgatgaaaggcgaaacacctttctcgaaa
tcaaatggtgccaaagcacatagccagacggtaaccaaaaaatccgcccaaccagatgaa
acgaatccggtagaaaccactgttgccgaaaaagccgatagccagtatgaaacggtcttt
agcgcagaacagttcaataaatggctggcattgattgaaaataccgagctattcgcgatc
gataccgagaccacctcgttgaatactcaacaagctcaagtagtgggtatctgtctggcg
gtaaaaaacccggataaagccggcaacctggcttgttatattccattggcgcacgattac
gaaggcgccccggcacaattggatttaaatgacaccttaaatcgcctaaaacctattcta
gagaatccaaatgtcgctaaatgtggtcaaaatctaaaatatgattggcatgtgctgcaa
aatcacggtatcacacttcaaggtatgaagttcgacaccatgttggagtcttattgcctg
aacagtgttgccacccgtcataatatggatgacctggcactgaaatacctgaatcaccgc
accacccattttgaagagattgccggtaaaggtaaaaaacaactgactttcaaccaaatt
gagattgaaaccgccgcacattatgcagctgaagatgcggacatcactttacagctacac
caaacactttatccgcaattaacagcagaacaaagcttggtgaacgtatttaacgacata
gaaatgcctttaatgccagttttggctcacatggagcgtaatggcgtcttactggatacc
gagatgcttgccaaacaaagtcaagaaatcagcgccaagctgactgaactggaacaaaaa
gcgcatttactggccggagagaacttcaatttgaactcgtccaagcagttacaggtcatc
ctatttgagaatctggaactgccgattattaagaagacgccaaagggccaaccatcaacg
gctgaaccagttttagtggaactggccgagcaaggccatgaaatgcccaatctgattttg
gaataccgttctttggcaaaactgaaatcgacctataccgattctctaccaaagcagatc
gaacagaaatccggccgtgtgcatacctcttaccagcaagccgtggcatccaccgggcgt
ttgtcatcaaccgaaccgaacctgcagaatatccctattcgttccgccgaaggccgtcgt
attcgtcaggcttttatcgctcgtccgggctataagctaatcgccgccgactactcgcaa
atcgagttaagaattatggcgcatctttccgccgataatggattgttgaccgccttcgcc
gaaggccgagatatccaccaagccaccgctgcagagatttttggtgttgagttaaacgaa
gtcactacagaacagcgtcgcagcgccaaggcggttaacttcggtttaatctacggcatg
tcggcatttggtttggccaaacaattgaatgtaccgcgtggcgtagcgcaggaatatatc
gacctgtacttctcacgctaccctggtgtgttggagtatatggatcgtaccaaggatttc
gccaaggccaacggttatgttgaaaccctgatgggtcgacgtctctatctgccggatatc
aatgcgcgtaacggccaattaagacaatacgccgaacgcaccgcgatcaatgcacctatg
cagggaaccgcagccgatattatcaaaaccgcgatgataaaaatcgaagcctggctaaaa
gactgtgaattcgatattcaaatgattatgcaagtacacgatgaattggtatttgaggtc
aaggaagaccagatcgatgccgtgagaccgcacattaaagagcttatggaaggcgcttta
aagctcgatgtgccactgattgttgaaatcggtcagggtaataattgggatgaggctcac
taa
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