Thiomicrorhabdus sediminis: FE785_00740
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Entry
FE785_00740 CDS
T05983
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
thig
Thiomicrorhabdus sediminis
Pathway
thig03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thig00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FE785_00740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thig03019
]
FE785_00740
03009 Ribosome biogenesis [BR:
thig03009
]
FE785_00740
Enzymes [BR:
thig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FE785_00740
Messenger RNA biogenesis [BR:
thig03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FE785_00740
Ribosome biogenesis [BR:
thig03009
]
Prokaryotic type
rRNA helicases
FE785_00740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_30
AAA_19
AAA_22
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QCU89256
UniProt:
A0A4P9K4V6
LinkDB
All DBs
Position
complement(174816..176582)
Genome browser
AA seq
588 aa
AA seq
DB search
MTTEVSFKDLNLLPQVLQAITEIGYETPSPIQAQAIPALLEGNDILGMAQTGTGKTAAFA
LPALSIAQYNQKDPQVLVLAPTRELAIQVAEAFQSFAHNLKGFHVLPIYGGSDYGTQIRA
LKRGVQVVVGTPGRVMDHINKGTLKLDNLKLLVLDEADEMLRMGFIDDVEWILKHTPDSR
QIALFSATMPKEVHRIATSYLDNPTEVIIKQKTTTATTIEQKYLLVSQAHKLDALTRILE
AEDKIDASIIFVRTKTATIELAEKLEARGYAAAALNGDIAQNHRERIVDQLKTGKLDILV
ATDVVARGLDVPRISHVFNYDIPQDNEAYVHRIGRTGRAGRSGSAILFVTPRERRLLNSI
ERTTKSKIPEMHLPSTQQINDSRVDRFKARIVEATKMDELAFYQDLVEQVENEQNIPAVE
IAAALARLLQGDIPFFLSEKPIAQPRERNRNERGDRGDRGGRNERRERKPRREYSATPDE
GMTRYRIEVGNQHGVRPGNIVGCIANEAGIDSEFIRQLRIEDNFSMVDLPASMPKDVRDD
LGKAWVCGQQLRIREVKDGGLPPRKRLSRHKKQGSPKDKGKPRRMKRD
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgacgactgaagtcagcttcaaagacttaaacttactgccgcaggtactgcaggcaatc
accgaaatcggttatgaaacaccgtcaccaatccaggctcaagccattccagctctgcta
gaaggtaatgatatcctaggtatggcacaaaccggtaccggtaaaacggccgcttttgcc
ctaccggctttaagcatcgcccaatataaccagaaagaccctcaggtattggtattggca
ccaacacgcgagcttgccattcaggtcgcggaagccttccagagctttgcccacaaccta
aaaggtttccatgttttaccgatttacggtggttctgactacggtacacagattcgtgcg
ctaaaacgcggcgtacaggtagttgtcgggacaccgggccgtgtcatggatcatatcaat
aaaggtaccttgaaactggacaacctaaaactattggttctggatgaagccgatgaaatg
ctacgtatgggctttatcgacgatgtcgaatggatcttgaagcacacgccagatagccgt
cagatcgctctgttctcggcaaccatgccgaaagaagtacaccgtatcgccacaagttac
cttgataacccgactgaagtcattatcaagcagaaaaccactacagcgacaactatcgaa
cagaaatacctattggtcagccaagcgcataagcttgatgccctaacccgcattcttgaa
gcggaagacaagattgatgcatcgattattttcgtgcgtaccaaaactgcgaccattgaa
ttggccgaaaaactcgaagcgcgcggctatgcggcagcggcacttaacggcgatatcgct
caaaaccaccgcgaacgcatcgttgatcagttaaaaaccggtaaactggatatcctggtt
gccacagacgtggttgcccgtggtttggacgtacctcgtatcagccatgtattcaactac
gatattcctcaggacaatgaagcctatgttcaccgtatcggtcgtaccggtcgtgccgga
cgctcaggttctgcaatcttgtttgtgacacctcgtgaacgtcgtttattgaattcgatt
gagcgcaccactaagagcaagattcctgaaatgcacctaccttcaacccagcagattaac
gacagtcgtgtcgatcgtttcaaggcacgtattgttgaagcgactaaaatggatgaactg
gctttctatcaggatttggttgaacaggttgaaaatgaacaaaacattccagccgttgaa
atcgccgctgccttggcacgcctactacagggtgatattccattcttcctatcggaaaag
ccgattgcgcaaccacgtgaacgtaaccgcaatgaacgcggagaccgtggcgaccgcggt
ggacgcaatgaacgtcgtgaacgtaaaccacgtcgtgaatacagtgccacacctgatgag
gggatgactcgttaccgtatcgaagtgggtaaccagcatggcgtgcgtccaggtaatatc
gttggctgtatcgccaatgaagccggtatcgacagcgagtttatccgtcaactacgtatc
gaagataacttcagtatggttgatctgccggcaagcatgccaaaagatgtacgtgatgac
ttgggcaaggcttgggtctgcggtcagcagctacgcatccgtgaagtcaaggacggcggc
ctaccaccacgtaagcgtctgtctcgtcataagaaacaaggcagcccaaaagataaaggc
aagccacgccgcatgaagcgtgactaa
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