Thiomicrorhabdus sediminis: FE785_01210
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Entry
FE785_01210 CDS
T05983
Name
(GenBank) 3'-5' exonuclease
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
thig
Thiomicrorhabdus sediminis
Pathway
thig03030
DNA replication
thig03430
Mismatch repair
thig03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
thig00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FE785_01210
03430 Mismatch repair
FE785_01210
03440 Homologous recombination
FE785_01210
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
thig03032
]
FE785_01210
03400 DNA repair and recombination proteins [BR:
thig03400
]
FE785_01210
Enzymes [BR:
thig01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FE785_01210
DNA replication proteins [BR:
thig03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
FE785_01210
DNA repair and recombination proteins [BR:
thig03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
FE785_01210
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
Rv2179c-like
Phage_TAC_13
YbjQ_1
Motif
Other DBs
NCBI-ProteinID:
QCU89346
UniProt:
A0A4P9K538
LinkDB
All DBs
Position
complement(287336..288412)
Genome browser
AA seq
358 aa
AA seq
DB search
MSNAQLILLDKRNQPLKDYLVAVAASDGLTIKGVEVMASPAKGEKSLLNGGIIIPPLEQY
DYNPKKLTEASLKQINVNDEIISIECFIDRCSNDEAVRKALSKSINKFSKQLLTIMQSFC
DSEVIDLIKERRNDALFKLHNHAKDLKGKKIVCIDIEATNISTDPEADIIQLSACDQDGK
ELFNQLINPGYDIPENDKHNITTEMVQGQPLLAQAWDEIHDTLRDADIVLAYSTESDFMY
LQKSAEKKMLRFELDYNTWLDAAEMSRDLIGAMRWHSEKMYWFFKTPKLTAAYEHILAKP
FPGDAHDALADAVATMELLQAMLEKGKKSQVKQPKPKAKAETITNNPFAAAFANAKKA
NT seq
1077 nt
NT seq
+upstream
nt +downstream
nt
atgagcaatgcgcaattaatcctgctagataaacgtaaccaacctttaaaagattacctt
gtggcggttgccgcatcagatggcctcaccataaaaggtgtcgaggtcatggcttctccg
gctaaaggcgaaaaatcattgctaaacggcggcatcatcattccacctttggaacagtat
gattacaacccgaagaagctgacagaagcctcgttgaaacagattaatgtcaatgatgaa
atcatcagtatcgaatgctttattgaccgttgtagcaacgacgaagcggtgcgtaaagcg
ctgagcaaatcgatcaataaattctccaaacaactattgacgattatgcagagcttttgc
gactcggaagtgatcgacctgatcaaagagcgtcgcaatgacgcgctattcaagctacac
aatcatgccaaagacctaaaaggcaaaaaaattgtttgtatcgatattgaagcgaccaat
atctccactgaccccgaagccgatattattcaactttccgcttgcgatcaggacggcaaa
gaactgtttaaccagctgatcaatccaggctacgatattcctgaaaacgataaacacaat
atcaccaccgaaatggttcaaggccagcctttattggctcaagcctgggatgagattcac
gataccctacgtgatgccgatatcgtacttgcttacagcaccgaaagcgatttcatgtat
ctgcaaaaaagcgccgagaaaaagatgttgcgctttgaacttgactacaatacttggctg
gatgcggcggagatgagtcgtgatttgattggcgccatgcgctggcacagcgaaaagatg
tactggttctttaagactcctaaactgaccgctgcttatgagcacattttggcaaaacct
ttcccgggcgatgcacatgatgcgctggctgatgcggtagcgacaatggaactgttacaa
gccatgctggaaaaaggcaagaagtcgcaagtcaagcaaccaaaaccgaaagccaaggcc
gagacaatcaccaacaacccttttgccgccgcgtttgccaatgccaaaaaagcttaa
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