Thiomicrorhabdus sediminis: FE785_03340
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Entry
FE785_03340 CDS
T05983
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
thig
Thiomicrorhabdus sediminis
Brite
KEGG Orthology (KO) [BR:
thig00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
thig03009
]
FE785_03340 (rlmD)
Enzymes [BR:
thig01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
FE785_03340 (rlmD)
Ribosome biogenesis [BR:
thig03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
FE785_03340 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Cons_hypoth95
Methyltransf_25
PCMT
MTS
RrnaAD
TRM5-TYW2_MTfase
Methyltransf_15
DOT1
Methyltransf_23
Methyltransf_11
Methyltr_RsmB-F
Methyltransf_12
Motif
Other DBs
NCBI-ProteinID:
QCU89739
UniProt:
A0A4P9K487
LinkDB
All DBs
Position
complement(737151..738413)
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AA seq
420 aa
AA seq
DB search
MNHNSSQLEHINVTALSDDGRGIAHIDGKITFIKDAIPGDIVDINLIEEHKNYNDAQLTT
LLSASKDRQQPFCPVFAQCGGCQLQHLKMDKQREYKVENFINRLRQALNFSKCKLSPAII
GKDQNYRRRARLGLAISKTDKQARLGFRRADSNELIDIEQCPVLTEALNKTLQKNRQSWL
SHASRSYKEITLVEADNGVFSHISQNQKTLEDLSENPAQTPYYELMGLQLNFPADGFVQV
NQNINQQMVEQAIDWLELKAEHKVLDLFCGVGNFTLPIAKHCQTVTGIEGVIELVQTAAD
NARHNQLDNCRFAKANLFEDNRKAEWFRKQRYDRILLDPGRQGAFEISKQLQLLKADIIV
YVSCNAATLIRDVKELEKHGYQLHKASLIDMFPHTHHTEVMVQLKKGKKPQKNNKKVFRF
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgaaccataactcttctcagctcgaacacattaatgttacagccctcagcgatgacggt
cgcggcattgctcacatagatggtaagattacctttatcaaagacgctattcccggcgac
attgttgatatcaacctgattgaagagcacaaaaactacaatgatgcgcaactaacaact
ctactgtccgcctccaaagaccggcaacagcctttctgccctgtttttgcccagtgtggc
ggttgccaattgcaacacttgaaaatggacaagcagcgcgaatacaaggtcgaaaacttt
attaaccgtttaagacaggcattgaatttttcaaaatgcaaactcagccccgccatcatc
ggtaaggatcaaaattatcgccgtcgcgcccgtctaggcttggcaatcagcaaaaccgac
aagcaggcccggcttggatttcgacgcgccgactccaatgaattgatcgacattgaacag
tgcccggttttaaccgaggcgctcaataaaaccttgcaaaaaaaccgtcaaagctggttg
tcacatgccagccgaagctataaagagatcactctggtagaagcggataacggtgtattc
agccatatcagccaaaaccagaaaacgcttgaagaccttagtgaaaacccggcacaaact
ccctactatgaactgatgggactacaactcaacttcccggccgacggttttgtccaagtc
aaccagaacatcaatcaacagatggtcgaacaagcgatagactggcttgagctgaaagcc
gaacacaaggtattagacctgttttgcggtgtcggcaacttcaccctaccgattgccaag
cactgccaaaccgttaccggtatcgagggtgtgattgaattggtacaaaccgcggctgac
aacgcacgacacaaccaactggataattgtcgtttcgccaaagccaatctatttgaggac
aaccgcaaagcagagtggttccgtaaacagcgctacgaccgaattttattggatccgggt
cgccagggcgcatttgaaatcagcaaacagctacagttattaaaagccgatatcatcgtc
tatgtgtcatgcaatgcggccaccttgatccgtgatgttaaagaactggaaaaacatggc
taccaactgcataaagcgagcctaatcgacatgttcccacacactcaccataccgaggtg
atggtgcagctgaaaaaaggcaagaaaccgcaaaaaaacaataaaaaggtttttcgcttt
taa
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