Thiomicrorhabdus sediminis: FE785_04110
Help
Entry
FE785_04110 CDS
T05983
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
thig
Thiomicrorhabdus sediminis
Pathway
thig03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thig00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FE785_04110
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thig03019
]
FE785_04110
03009 Ribosome biogenesis [BR:
thig03009
]
FE785_04110
Enzymes [BR:
thig01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
FE785_04110
Messenger RNA biogenesis [BR:
thig03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FE785_04110
Ribosome biogenesis [BR:
thig03009
]
Prokaryotic type
rRNA processing factors
FE785_04110
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
QCU89881
UniProt:
A0A4P9K532
LinkDB
All DBs
Position
complement(902978..905671)
Genome browser
AA seq
897 aa
AA seq
DB search
MKRMLINATQVEETRIALVDGQTLYDLDVETPQHQKKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPFKEVAEEYYPDKKPDSGRLSIKDVLKEGQEIIVQVQKEERGNKGAALTTQI
TLAGPYVVMMPNNPKAGGISRRIEGDDRSDIRDNLRDLDTPEGMGLIIRTAGVGKSTEEL
QWGVNYLIQLWEAIQSASEQREAPFLIHQESDIVILAIRDYLRQDIGEIIIDNMDVYHKA
RDFIQHVMPQQVYKVKPYQDKIPLFTRFQIESQIESAYQREVTLPSGGSIVIDITEALTA
IDINSSRATKGGDIEETAFNTNMEAACEIARQLRLRDLGGLVVIDFIDMHSNRHQREVEN
KMREAVKTDRARVQIGKISRFGLLEMSRQRLRPSIEESTQIVCPRCHGVGVIRGVESLGL
SVLRLLEEESMKENTKRVTVQLPVDVATFLLNEKRNQITKIEDRYSLHILIVPNEHLETP
QYMMERTRIGEETSSAASYEVKEIISEDLEQVAEPVKPKVKEEPAVQNIQPTAPPPAPKA
EPAKPGLFARVWRALFSKDDEEETKKKTRGRNDSNRRNNGRRRNNGENRNDGRRRNRRNN
RNNNQDNDDNKSQNRAHDKNQDRNLDKHQDNKAQNDSTPNERGGRRRRRNRRDRDTNVNN
TAANELDNNQPQEQQADNAAESNAPASEAKKERKPREERGGRRRGGRSSRYNSRRRAPAN
AATMSIDSPAPGTEHAENKDNQAPVDNNIETNVETNEAVVENTAVNVEQTAEVKSSDESA
KTEPHVESQADTKVEAADNDATNEPAKVAQTKENASEQAAHEPVVSDSENETAAQAETVA
DNETASENSDESANQDEDKPRQRRRARRPRRPNTRSRSNRGRKPAESSNSDGGSPAE
NT seq
2694 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgctcataaatgcgacccaagtcgaagagactcgcattgcccttgtagac
ggtcaaaccctttacgatttagatgtggaaaccccacaacaccaaaagaaaaaagccaat
atctataagggtaaaattacccgaatcgagccaagcctggaagcagcctttgttgattac
ggcgctgaaagacacggtttcctaccttttaaagaagtcgccgaagaatactaccctgac
aaaaaaccggattcaggccgtttaagcattaaagatgtgcttaaagaaggtcaagagatc
atcgttcaggtgcaaaaagaagagcgtggtaacaaaggggccgccctgaccacgcaaatc
actctcgccggcccttatgtggtaatgatgccgaacaaccctaaagccggtggtatctct
cgtcgtattgaaggtgatgaccgtagcgatattcgcgataatcttcgcgacctagacacg
cctgaaggtatgggattgattatccgtactgccggtgtcggtaaaagcaccgaagaactg
caatggggtgttaactacctgattcagctttgggaggcgattcaatcggcttctgaacag
cgtgaagcgcctttcctaatccaccaggaatcggatatcgtcattttggcgattcgtgac
tacctacgtcaggacatcggtgaaatcattattgataatatggatgtctatcataaggcg
cgtgatttcattcagcacgttatgccgcaacaggtttataaagttaagccttatcaggac
aagattccattattcacccgtttccagatcgaatcgcaaatcgaatcggcttatcagcgt
gaagtgaccctaccgtctggtggctcaatcgtcatcgacatcaccgaagctttgactgcg
atcgacatcaactcaagccgtgcaaccaaaggtggtgatatcgaagagaccgcctttaac
accaatatggaagcggcttgcgagatcgcccgtcagttacgcctgcgtgacttgggtggt
ctagtggtgatcgactttatcgatatgcactcgaaccgtcaccagcgagaagtggaaaac
aaaatgcgcgaagcggtgaaaacggaccgcgcccgtgtgcaaatcggcaagatctcacgt
ttcggcctactggaaatgtcacgccagcgtctgcgcccttctatcgaagaatcgacacag
atcgtctgccctcgctgtcacggtgtcggcgtaatccgtggtgtcgagtcactgggtctt
tcagtattgcgtctacttgaagaagagagcatgaaagaaaacaccaaacgcgtaacggtt
cagttaccagttgatgtggcgactttcctattgaatgaaaaacgtaaccagattactaaa
atcgaagaccgctatagcctacatatcctgatcgttccaaatgaacacttggaaactccg
cagtatatgatggagcgtacccgtattggtgaagaaaccagtagtgcagccagttatgaa
gtcaaagagattatcagcgaagacttggaacaagtggcagaaccggttaaaccaaaggtt
aaagaagagccggctgtacagaatattcagccgacagctccaccaccggcacctaaagca
gaaccggcaaaaccgggactatttgctcgtgtttggcgcgctttattcagtaaagatgac
gaagaagagaccaaaaagaaaacacgtggtcgcaacgacagcaatcgtcgtaataacggg
cgccgccgcaacaatggagagaaccgtaatgatggccgtcgtcgtaaccgtcgcaacaac
cgcaataacaatcaagacaacgatgacaacaagtcacagaatcgcgctcatgacaagaat
caagaccgcaatctagataagcatcaagacaataaagcgcaaaacgacagcactccaaat
gaacgtggtggccgtcgtcgtcgtcgcaaccgtcgtgatcgcgatacaaacgttaacaat
accgctgcgaacgagctagataacaatcaacctcaagagcaacaagcggataacgctgcc
gaaagcaatgcaccggcaagcgaagcgaaaaaagaacgtaaacctcgtgaagaacgtggc
ggccgtcgtcgcggagggcgtagcagccgttacaacagtcgccgtcgtgcaccggctaat
gccgcgaccatgtcgatcgactcgccggctcccggcacggaacacgctgaaaacaaagat
aatcaagcgccagtcgataacaacattgaaacaaacgtcgagacaaatgaagcggtagtt
gaaaacactgcggtaaatgttgaacaaacagccgaggtgaaatcttccgatgagtcggcc
aaaactgaaccccatgttgaaagccaagccgataccaaagttgaagccgctgacaacgac
gctacaaacgaaccggctaaggttgcgcagactaaagaaaacgcgtctgaacaagccgct
catgagcctgtagtttctgactctgaaaacgaaacagcagctcaagctgaaacggttgca
gataatgaaactgcctcggaaaacagtgatgagtctgccaatcaggatgaagataagccg
cgtcaacgccgtcgtgcgcgtcgccctcgccgtcctaatacacgttcacgttcaaaccgt
ggccgtaaaccagcggagagctcaaactctgatggtggatcaccagctgaataa
DBGET
integrated database retrieval system
