Thiomicrorhabdus sediminis: FE785_04425
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Entry
FE785_04425 CDS
T05983
Symbol
uca
Name
(GenBank) urea carboxylase
KO
K01941
urea carboxylase [EC:
6.3.4.6
]
Organism
thig
Thiomicrorhabdus sediminis
Pathway
thig00220
Arginine biosynthesis
thig00791
Atrazine degradation
thig01100
Metabolic pathways
thig01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
thig00001
]
09100 Metabolism
09105 Amino acid metabolism
00220 Arginine biosynthesis
FE785_04425 (uca)
09111 Xenobiotics biodegradation and metabolism
00791 Atrazine degradation
FE785_04425 (uca)
Enzymes [BR:
thig01000
]
6. Ligases
6.3 Forming carbon-nitrogen bonds
6.3.4 Other carbon-nitrogen ligases
6.3.4.6 urea carboxylase
FE785_04425 (uca)
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Gene cluster
GFIT
Motif
Pfam:
CT_A_B
CPSase_L_D2
Biotin_carb_N
CT_C_D
Biotin_carb_C
Biotin_lipoyl
Dala_Dala_lig_C
Biotin_lipoyl_2
ATP-grasp
HlyD_3
HlyD_D23
ATP-grasp_3
RnfC_N
ATP-grasp_4
DksA_N
ATP-grasp_5
DUF2118
Motif
Other DBs
NCBI-ProteinID:
QCU89932
UniProt:
A0A4P9K4R1
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Position
complement(974562..978209)
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AA seq
1215 aa
AA seq
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MFKKVLIANRGAIATRIMRTLKKMNIASVALASDADRASLHVQQADEVIFLKGNTASETY
LNVPFILAEAKRLGVDAVHPGYGFLSENTTFASDCEAAGITFIGPTNEQIRDFGLKHTAR
ELAIKAKVPLLPGSGLLDSVEQALSEAERIGYPVMLKSTAGGGGIGMQKCDNAEDLNNAF
EQVKRLSQNSFGQAGLFLEKFVVHARHIEIQIFGDGQGNVVSFGERDCSLQRRNQKVVEE
TPAPGISREQVQQMEDYAIELCKLVNYKSAGTVEYVYDADSNEFYFLEVNTRLQVEHGIT
ETVRNVDLVEWMIKVAYDSKLPLSAEQIPAPQGHAIEVRVYAEDPFKNFQPSAGKITGWQ
MPSNCRVDTWCGRGIEVSSFYDPMMAKIIVKGESRESTISALQDALHETQIHGFETNVAY
LEALSHNDTFKVGAQLFTQFLNGFKHTPNTIEVTNPGTHSMLVSYPGRVGYWDIGVPPSG
PMDALSHRLANRCLNNPEDAATIEMTVSGISMKFDTDTMICITGADIKATLDKEPIAQNR
AIKVKAGQQLKSKVIKDIGQRAYLAVLGGFDVPDYMGSKTTFSLGGFGGHGGRLLRIGDV
LRVQNLDTQDELIKLPDNAIPTLGNLYEIAVIYGPQGCPDFFTEDDIENFFSAEWKVHYN
SSRTGIRLIGPKPQWARNSGGEAGLHPSNIHDNPYAIGAIDFTGDMPVILAQDGPSLGGF
VCPATIIEAEQWKMGQLRPGDKVKFKAVSTAEAERALKAQEAAILSLNDKVTPTLEFLDS
STEQSCIAFEQDHTQHEIGVKYRRSGDSHLLIEYGAMELDLALRFRIQVLFEKLRDLRDN
DNPAQKWAFLKDLTPGIRSLQVHYDPRQISQQDLLEKLIALESEVGSGKDLTVKSRIVHL
PLSWDDPSTRLAIEKYMTTVRPNAPWCPSNIEFIRRINGLDSIEDVKKIVFNANYLVMGL
GDVYLGAPVATPLDPRHRLVTTKYNPARTWTPENAVGIGGAYMCVYGMEGPGGYQFVGRT
IQMWNAYFQTQNFSSDKPWLLDFFDQIKFYPVSEEELKQARLDFPLGRFDIEIEETELSL
NAYQQFLAENDDSIGEFQDTQQAAFEAERLYWEESGLANFESDTEQEELQADAPLQIPEG
FAAANSPITGSVWKLQVKPGDRVEEDQVIAILETMKIEIPVNAEFSGTVSEILVNEGDLI
QTGQALMVLKEDTHA
NT seq
3648 nt
NT seq
+upstream
nt +downstream
nt
atgtttaagaaagtactcattgccaaccgcggcgccatcgccacccgtattatgcgcacg
ctgaaaaagatgaatatcgcttcggtcgccctcgcctcagatgcggatcgtgcgtcatta
catgttcagcaagccgatgaagtcatctttcttaagggtaataccgcctcggaaacctat
ctgaatgtcccgtttattcttgccgaagcaaaaaggcttggcgtcgatgcggtccacccg
ggttacggttttttaagcgaaaacaccacttttgcctcggattgtgaagccgccggtatc
acctttatcggcccgaccaatgaacagattcgagatttcggcctgaaacacaccgctcgc
gaacttgcaatcaaagccaaggtgcctttactgccgggttcgggtctactggattctgtt
gaacaggctttaagcgaagcagagcgcatcggttatccggtcatgctcaaaagtaccgcc
ggtggtggcggtatcggtatgcaaaaatgtgacaatgccgaggatttgaataatgcgttt
gaacaggtcaaacgtttgagccagaactctttcggtcaagccggtttgttcctggaaaaa
ttcgttgtccatgcacgccatatcgaaattcagattttcggtgacggtcaaggtaatgtc
gtgtctttcggagaacgtgactgttctttacaacgccgtaaccagaaagtggttgaagaa
actcccgcaccgggcatcagccgtgagcaagtccagcagatggaagattatgcgatcgag
ttatgtaaactggtcaattataaatcggccggtaccgtcgaatatgtctatgatgccgac
agcaatgagttctatttccttgaggtgaatacccgattgcaggtggaacacggtattacc
gaaacggtgcgcaatgtcgatttggtcgagtggatgatcaaagtcgcctacgattcgaaa
ctgcctttatccgccgaacagattccagcgccgcaaggtcacgccattgaagtgcgtgtt
tatgctgaagatccatttaaaaacttccagccaagtgccggaaaaatcaccggctggcaa
atgccaagcaactgccgtgtcgatacttggtgtggtcgcggcatcgaggtcagttcgttt
tatgatccgatgatggcgaaaatcattgttaaaggcgagagccgtgaaagcacgatcagc
gctttgcaagacgcattgcatgaaacgcagattcacggctttgaaaccaatgtcgcttat
cttgaagcgcttagccataatgatacctttaaagtcggtgctcagctgttcacccagttc
ttgaacggttttaaacacaccccaaatacgattgaggtcactaatccgggaactcactct
atgctggtgagctatccggggcgagtcggctattgggatatcggtgtgccaccatcaggg
cctatggatgcgctttcccatcgtttggcgaaccgttgcctaaacaacccggaagatgcc
gcgaccattgaaatgacggtatcgggtatcagtatgaaattcgataccgatacaatgatc
tgtattaccggtgccgatattaaagccaccctggataaagagccgattgcccaaaaccgg
gcgattaaggtcaaagccggtcaacaactgaaatcaaaagtcattaaagatatcggtcaa
cgcgcctatctggcagtattaggcggctttgatgtgcccgattatatgggcagtaaaacc
accttctctttaggcggcttcggtggtcacggtggtcgcctgttacgtattggtgatgtg
ttgcgtgtacagaatctagatacacaggatgaactgattaaactacctgacaacgctatt
ccaactttaggcaacctgtatgaaatcgcagtcatttacggtccgcaaggctgcccggac
ttctttaccgaagacgatatcgaaaacttcttctctgccgaatggaaagtacattacaac
tcaagccgtaccgggattcgattgattggcccgaaaccgcaatgggctcgcaacagtggt
ggtgaagccggcctacacccttccaatatccacgacaatccctatgccatcggtgcaatc
gatttcaccggtgatatgccggtgattctcgcgcaagacggtccaagcttaggggggttt
gtctgcccagccaccattatcgaagccgaacaatggaaaatggggcaactgcgcccgggc
gacaaggtcaagttcaaggcggttagtacagcggaagcggaaagagcgttaaaagcccaa
gaagcggcaattctctcactaaatgacaaggtcacgcctactctagagtttttagacagt
tcaaccgaacaatcctgcattgcttttgaacaggaccatacgcaacatgaaatcggcgtt
aaataccgccgttccggcgactctcaccttctcatcgaatatggagcgatggaactggat
ctggcgttgcgtttccgtattcaggtgttgttcgaaaagctgcgtgatttgcgtgataac
gacaacccggcgcaaaaatgggcgtttttgaaggacctgacaccaggtatccgttcgttg
caggtgcattacgacccaagacaaatctcacaacaagatttactggaaaaattgattgcg
ctggaaagcgaagtcggttccggtaaggacctgacggtaaaaagtcgcattgttcatctg
ccgttatcttgggatgatccgagcacacgtttggcaattgaaaaatacatgaccacggtc
cgtcctaatgccccatggtgtccgagcaatatcgagtttatccgccgaattaacggcttg
gacagcattgaagatgtcaaaaagattgtctttaacgccaactatctggtgatgggcttg
ggtgatgtctatctgggcgctccggttgcaaccccgcttgaccctcgtcaccgtctggtc
accaccaaatacaacccggcacgaacctggacaccggaaaacgccgtcggtatcggtggt
gcctatatgtgcgtttacggtatggaaggcccgggcggttatcagtttgtgggtcgcacc
atccagatgtggaacgcctatttccaaacacagaacttcagttccgacaaaccttggtta
ttggatttcttcgatcagattaaattctatccggtcagtgaagaagaactgaaacaggca
cgtctcgatttccctctgggacgttttgacattgaaatcgaagagaccgaactgtcattg
aatgcttatcagcagttccttgccgaaaacgacgacagcattggcgaattccaagacact
cagcaggccgcattcgaagccgagcgtttgtactgggaagaatcaggattggcgaacttc
gaatcggacaccgaacaagaagaattgcaagccgatgcacctttacagattccagaaggg
tttgccgcggccaattcgccgattaccggcagtgtctggaaactgcaagtcaaaccagga
gaccgcgtcgaagaggaccaggtgatcgccattttggaaaccatgaaaatcgaaatccct
gtcaatgccgaattcagcggcacagtaagcgaaattttagtgaatgaaggcgacctgatt
caaaccggtcaggcactgatggtattaaaggaagacacccatgcatga
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