Thiomicrorhabdus sediminis: FE785_05085
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Entry
FE785_05085 CDS
T05983
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
thig
Thiomicrorhabdus sediminis
Pathway
thig03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thig00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FE785_05085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thig03019
]
FE785_05085
Enzymes [BR:
thig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FE785_05085
Messenger RNA biogenesis [BR:
thig03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FE785_05085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
ERCC3_RAD25_C
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
QCU90051
UniProt:
A0A4P9K5H7
LinkDB
All DBs
Position
complement(1122257..1123669)
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AA seq
470 aa
AA seq
DB search
MKFNDLGLNAHITKAIDNAGYTTPTPIQQQAIPAVLQGKDVMAAAQTGTGKTAAFTLPLL
EKLSQGRKAKSNQARALILTPTRELALQVSESVETYGKELLLSSTVVYGGVKINPQMQRL
HKGVDILVATPGRLLDLYQQNAIGFDELEILVLDEADRMLDMGFIRDIKKIIALLPKKRQ
NLLFSATFSDDIRALAKALVHQPVEISVTPENSTAETVKQKIYPVDKAQKTALLIKLIQD
HAWYQVLVFARTKHGANRLATQLGKHKIKAAAIHGNKSQNARIRALNEFKDNQLQVLVAT
DIAARGIDIDLLPHVVNFDLPHVSEDYVHRIGRTGRAGEKGEAISLVCAEEHKELVGIEN
LINQILPREIVAGFEPKNPLGESKLGIKKKKPKKPKKKKPWQDSAATNEQKTSPKKKRPA
NNSRNLQTSDVKPGKPRSNKPTNKNATKPNNSSNQRQPVNRKKPNIDQGK
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgaaatttaacgaccttggcttaaacgcccatattaccaaagcgattgacaacgcaggt
tacacaaccccgacacccattcagcagcaggcgattcctgcggtcctgcaaggtaaggat
gtcatggcggcggcacagaccggaaccggaaaaaccgccgcgttcaccctgccgttattg
gaaaagttaagccaaggtcgtaaagccaaatccaaccaggcaagagccttgattttgacg
ccgacccgagaactggcattgcaagtcagcgaaagtgtcgaaacctacggcaaagaactg
cttcttagctcaaccgtggtctatggaggcgttaaaatcaatccgcaaatgcagcgcttg
cataaaggtgttgatatccttgtggcaacaccggggcgcttattggacctttaccagcaa
aacgccatcggtttcgatgaattggaaattctggtgcttgatgaagctgaccgaatgctt
gatatgggctttatacgcgacatcaaaaaaataatcgcgctattaccgaaaaaacgccag
aacctgcttttttcagcgaccttttccgatgatatccgcgccttggcaaaagcactggtg
catcaaccggtagagatttccgtgaccccggaaaactcaactgcggaaaccgttaagcag
aaaatctatcctgtcgataaggcacagaaaacagccttattgatcaagctgattcaagac
catgcctggtatcaggttttggtctttgcgcgcaccaagcacggcgctaaccgtctcgct
acacaactgggcaaacacaaaatcaaagccgcggcgattcacggcaacaaaagccagaat
gcccgtatcagagccttgaacgaattcaaagacaatcaactgcaggtattggtggcgacc
gatatcgccgcgcgcggcatcgatatcgacctgttacctcatgtggtcaactttgattta
ccccatgtatcggaagattatgtgcaccgtatcggtagaaccggtcgcgccggtgaaaaa
ggtgaagccatctcgcttgtctgcgccgaagagcataaagagctggtcggtattgaaaac
ctgattaaccagatattgcctagagaaatcgttgccgggtttgaaccgaaaaacccattg
ggcgaatccaaactgggtataaaaaagaaaaaaccgaaaaagccaaaaaagaaaaaaccg
tggcaagattctgctgcgaccaatgagcagaaaacgtcacccaaaaagaaaagaccggca
aacaacagtcgtaaccttcaaacctctgatgtcaaacccggcaagccgcgtagcaacaaa
ccgacaaataaaaacgctactaaaccgaacaattcgtcaaaccaacgccagcctgtcaat
cgaaaaaagccaaatatcgatcagggtaaataa
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