Thiomicrorhabdus sediminis: FE785_06385
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Entry
FE785_06385 CDS
T05983
Symbol
thpR
Name
(GenBank) RNA 2',3'-cyclic phosphodiesterase
KO
K01975
RNA 2',3'-cyclic 3'-phosphodiesterase [EC:
3.1.4.58
]
Organism
thig
Thiomicrorhabdus sediminis
Brite
KEGG Orthology (KO) [BR:
thig00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
thig03016
]
FE785_06385 (thpR)
Enzymes [BR:
thig01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.4 Phosphoric-diester hydrolases
3.1.4.58 RNA 2',3'-cyclic 3'-phosphodiesterase
FE785_06385 (thpR)
Transfer RNA biogenesis [BR:
thig03016
]
Prokaryotic type
tRNA spricing factors
Other tRNA splicing factors
FE785_06385 (thpR)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigT_PEase
2_5_RNA_ligase2
AKAP7_NLS
Motif
Other DBs
NCBI-ProteinID:
QCU90281
UniProt:
A0A4P9K630
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All DBs
Position
1405212..1405784
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AA seq
190 aa
AA seq
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MRCFIALPIDPNTRGTLHNCSLRLQTQPWAHHIKWFNADNYHLTLQFIGSKVTADKVDQI
TQAMDNWLENIPAFEIRIKRIELFPDNSAPHTITATIENNPRLNRLAKLIADKLSTIGLQ
PSQKSFRPHISLGRINTKAGSKDFLIPPALNQVSQFDLALRVDTITLYRSELTQTAPIYT
ELKSIYLNNH
NT seq
573 nt
NT seq
+upstream
nt +downstream
nt
atgcgttgctttattgccctacccattgaccctaacacccgtggcactttgcataattgc
tccctgcgactgcaaacccaaccctgggcacaccatatcaaatggttcaacgccgacaac
tatcatctgactttacagtttatcggtagcaaggttacggctgataaagtcgaccaaatc
acgcaagcaatggataactggctagagaacattcccgcctttgagattcgcattaagcgc
atcgagctgtttcccgataacagcgccccgcataccattactgcaacaattgaaaacaat
ccccgcttgaaccggctcgccaaattaatcgcagacaaactctccaccatcggtttacaa
ccaagccaaaaaagctttcgtccgcatattagtctgggacgaataaacactaaagccggt
agcaaagactttttgattccgccagcgcttaatcaagtaagccaatttgatttagcctta
agagtcgatacaatcaccctctatcgaagtgagctgacgcaaacagcgccaatttacacc
gaactgaaaagcatttatttaaacaaccattaa
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