Thiomicrorhabdus sediminis: FE785_06825
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Entry
FE785_06825 CDS
T05983
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
thig
Thiomicrorhabdus sediminis
Brite
KEGG Orthology (KO) [BR:
thig00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thig03019
]
FE785_06825 (hrpA)
Enzymes [BR:
thig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FE785_06825 (hrpA)
Messenger RNA biogenesis [BR:
thig03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
FE785_06825 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
AAA_19
HA2_C
HA2_N
AAA_22
Cullin_Nedd8
nSTAND3
ResIII
NACHT
ABC_tran
PhoH
DUF6746
TsaE
RsgA_GTPase
T2SSE
Flavi_DEAD
AAA_23
Motif
Other DBs
NCBI-ProteinID:
QCU90363
UniProt:
A0A4V1HHV7
LinkDB
All DBs
Position
complement(1503815..1507849)
Genome browser
AA seq
1344 aa
AA seq
DB search
MPNSPMPNSLKSIKPELAKCLIKDRFRLQRQFDQFGFAKMADRQLEQSEQWTKWLDWLSQ
SQAKAEQRLASIPNIEYDDALPVAAKKDELVELIKNNQVVVIAGETGSGKTTQIPKICLE
AGIGKYGKIGCTQPRRLAARSVAERVAEELGSSLGELVGYQVRFLDQVKEHSLIKVMTDG
ILLAEVQNDRFLNQYEAIIIDEAHERSVNIDFLLGILKQLIQKRPDLKVIITSATIDTQR
FAEHFEVNGVKPPVVEVSGRTYPVEVRYRPLASFEDDAGNVIEQEMTDGIVAAIDELAQN
DPFGDVLVFQVGERDIKETTEALRKHKMKNTEIVPLYARLSMAEQQKVFQTSPNRRIILS
TNVAETSLTVPGIKYVIDPGQVRISRYSVRSKVQRLPVEKISQASANQRKGRCGRVSDGI
CIRLYDEDDFKSRPEFTDAEIHRTALSSIILTMTELKLGAVKRFPFIEAPSDKAVNDGFR
QLHELGAIDDNRQLTEKGRQIAKLPIDPSVAAMILEAQKNNVLAEVVILAAVLSIQDPRD
INETTMQAARTAHKRFEDERSDFLFFLNLWRFYEHQRRHLSQNKLRKLCKTNFLSYLRMR
EWHELTMQLEQSLRRIGIKVGELHLYEEVRKKGPQGQEGEVSERLSDIHSIAVHQSLMAG
LLGNIATRDDEKSYLGARNTKLFLHPSSVLFKKKPKWILSAELVETSKLFARTNANIDVR
WVEKLAPHLVKRSYSDPHWQKKAGQVGAYESVTLFGLPIISRRHCNYGPINPKESHKIFL
RHGLVEGQLQTNAEFYQHNQQLIADIEKLEHKLRRPDFLVDDEVLYEFYAARIPEHIYSK
PAFEKWLKKTGKTAPEKIKALFVTEELLMKQQADASLLQDYPDQVAMGNALGQQLDKPLK
LKVDYHFEPGKQSDGVIFNLPLANLNQFNAEQFDWLTPGLLKEKTVYLIKSLPKGLRKQF
IPAPQYADLALAEMNPEKKADGKKVMPYLHQLVWALNRRAQQMVSLDDFQATELPDHLKP
FFILRDDKGRKLAESGDLETLKQDYQHLVDAKIQQHQKASQKPEKVIENWDFGDLPESKT
INSHGKQILVYPALQLSSGQITLQLMADKDTAMQAHAEAVYCLLERLLADKLKYLQKKLD
LKKACLCYAPYGTCQDLTQQVIDRALQQLLPEPQNIRLQTEFAVVLEKVKSEWILQAQAI
AKQVNAIFIEHQQIAKKVRGKVNPRWLASVADIQKQLDGLISKDFVRNTPDNWFMQIERY
LKALQKRLEKLDLDPLKDQRSIREIQPLLEQYEKLAKDPVYQSQAEVTEIRWMLEELRVS
LFSQPMKTVKPVSIPRLEKMFKAL
NT seq
4035 nt
NT seq
+upstream
nt +downstream
nt
atgcctaatagccctatgcccaattctttaaagtccatcaagcctgagttagccaagtgt
ttgatcaaagaccgttttcgtctgcaacgccagtttgatcaattcggttttgcaaagatg
gctgacagacagcttgaacagagcgaacagtggactaagtggttggactggttgagtcaa
tctcaggcaaaggccgaacagcgtttggcatccatccccaatattgagtatgacgacgct
ttgccggtagcggcgaaaaaagacgaattggtcgagctgatcaaaaacaatcaggtcgtg
gtcattgccggtgagaccggttctggtaaaaccacccagattcccaagatctgtctggag
gcgggcataggtaaatacggcaaaatcggttgtacccagccacgtcgactcgccgccaga
agcgttgccgaacgtgttgccgaggaactcggttcatccttaggtgagctggtcggttat
caggtacgctttttggatcaggtcaaagagcacagtttgatcaaggtgatgaccgacggg
attttgcttgcagaagtacagaacgaccgttttttgaatcagtatgaagcgattattatc
gatgaggcgcatgagcgctcggtcaatatcgatttcctgcttggtattcttaaacagctc
attcaaaaacgcccggatctgaaggtgattatcacctcggcgactatcgatacccaacgt
tttgccgagcattttgaggtgaatggcgtaaaaccgccggtggtggaagtttccggaaga
acctatccggtggaagtgcgttatcgtccgttggcgtctttcgaagacgatgccggtaat
gtcatcgaacaggagatgaccgacggcatagtcgccgcgattgatgaactggctcagaac
gacccgtttggtgatgtgttggtgtttcaggtcggtgagcgcgatatcaaggaaaccacc
gaggctttacgcaaacataaaatgaaaaacaccgaaatcgtaccgctctatgcgcgtttg
tcgatggcggagcagcaaaaggtgtttcagacctcaccaaaccgacgcattattttaagt
accaatgtggccgaaacctctttgacggtgccgggcatcaagtatgtcatcgacccgggg
caggtgcgtatcagccgttatagcgtgcgctccaaggtgcaacgtttaccggtggaaaaa
atctcccaagcctccgccaaccagcgaaaagggcgttgcgggcgtgtcagtgatggtatc
tgtattcgtttgtatgacgaggatgatttcaaatcgcgcccggaattcaccgatgcggag
attcatcgtaccgccttgagctcgattatcttgacgatgaccgagcttaagctcggagcg
gtcaaacgttttccgtttattgaagcaccatctgataaagccgtgaatgacggttttagg
cagctgcatgagttaggcgcgattgacgataatcgccagctcacggaaaaaggtcgtcaa
atcgccaaattgccgattgatccatcggtcgcggcgatgattttggaagcgcaaaaaaac
aatgtgctcgccgaggtggtgattctggcggcggtgttaagtattcaagacccgcgcgat
attaatgaaaccacgatgcaagcggctcgtaccgcgcataaacgttttgaggatgagcgt
tcggattttctttttttcctcaatctgtggcgtttttacgagcatcagcgccgtcatctg
agtcagaacaaactgcgtaagctttgtaagaccaacttcctctcttatctgcgtatgcgt
gaatggcatgagttgaccatgcagttggagcagagcctgcgccgtatcggtatcaaggtt
ggtgagttgcacctttatgaagaggtacgcaaaaaaggtccacaaggccaagagggcgaa
gttagcgaacgtctcagcgatatccattcgattgccgtgcatcaatcgctgatggcaggg
cttttgggcaatatcgccacaagggatgatgaaaagtcttatttgggagcgcgcaatacc
aaactgtttctgcatccgagttctgtgctgtttaaaaagaaaccgaaatggattctttcc
gccgaactggtcgagacctcaaaactgtttgcccgcaccaatgccaatattgatgtgcgt
tgggtggagaagctcgcgccacatctggtcaaacgcagttacagcgatccgcattggcag
aaaaaagccggtcaggtcggtgcctatgaatcggtgacgcttttcggcttacctatcatc
agtcgcaggcactgtaattacgggccgatcaatccgaaagagtcgcataagatattcctg
cgccacggtttggtggaagggcagttgcagacgaatgccgagttctatcaacacaaccaa
cagttgattgccgatattgaaaagctggaacacaaattacgtcgcccggattttttggtt
gacgatgaagtcttgtatgagttttacgcggcacgcattcccgaacatatctattccaaa
ccggcttttgagaaatggctgaaaaaaaccggcaaaacggcaccggaaaaaatcaaagca
ctgtttgtgaccgaagagctgttgatgaaacagcaggccgatgccagtttattgcaggat
tatcccgatcaggtggcgatgggcaatgcgctcggtcaacagttggataaaccgttgaag
ctgaaggtggattaccatttcgagccgggtaaacagagtgacggcgtgattttcaacctg
ccgttggctaatttgaaccagttcaatgccgaacagttcgattggttgacaccggggctt
ttgaaagagaaaaccgtttatctaatcaagtccttaccgaaaggcttgcgtaagcagttt
attccggcaccgcaatatgccgatctggccttggcggaaatgaatcctgagaaaaaggcc
gacggtaaaaaagtcatgccgtatctgcatcaattggtgtgggcgttgaatcgccgtgcc
cagcagatggtatcgctggatgatttccaagccaccgagttgccggatcatcttaaaccg
ttttttatcctgcgcgatgataagggccgaaaacttgccgaaagcggtgatttggaaacc
ctaaagcaggattaccagcatctggtggatgccaagatccagcaacaccaaaaagccagt
caaaagccggagaaggtgattgaaaattgggatttcggtgatttgccggaatcgaaaacc
atcaatagccacggcaaacagattttggtttatccggcgttgcagttatcgtcagggcaa
atcacgctgcaattgatggccgataaagataccgccatgcaggcgcacgccgaagcggtt
tattgtctgctcgaacgtttactggcggataaactcaagtatttgcagaaaaaactcgat
ttgaaaaaagcctgtctgtgttatgcaccttacggtacttgtcaggatttgacccagcag
gtgattgatagggctttgcaacagttgctgcctgaaccgcagaatatccgtttgcaaacg
gagtttgcagttgttttggaaaaggtgaaaagcgaatggattttacaggcgcaagccatt
gccaaacaggtgaatgctatttttattgaacaccagcagattgccaaaaaagtgcgcggc
aaggtcaatcctcgttggttggcgtcggtggccgatatccaaaagcagctcgatggtttg
atcagtaaagattttgtgcgcaatacgccggataattggtttatgcagatagagcgttat
ttgaaagccctgcaaaaacgtctggaaaagctcgatttggatccgcttaaggatcaaaga
tcgatacgtgaaatccagcccttattagagcaatatgagaagcttgccaaggatccggtg
tatcaatctcaagcagaggtaaccgaaatccgttggatgctagaagagttacgggtttca
ttattttcacaaccgatgaaaaccgtcaagccggtttccattccccgtctcgagaaaatg
ttcaaagccctatga
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