Thiomicrorhabdus sediminis: FE785_06860
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Entry
FE785_06860 CDS
T05983
Name
(GenBank) LysM peptidoglycan-binding domain-containing protein
KO
K08307
peptidoglycan lytic transglycosylase D [EC:
4.2.2.29
]
Organism
thig
Thiomicrorhabdus sediminis
Brite
KEGG Orthology (KO) [BR:
thig00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
thig01011
]
FE785_06860
Enzymes [BR:
thig01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.29 peptidoglycan lytic transglycosylase
FE785_06860
Peptidoglycan biosynthesis and degradation proteins [BR:
thig01011
]
Peptidoglycan biosynthesis and degradation
Lytic transglycosylase
FE785_06860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LysM
SLT
LysM1_NFP_LYK
LysM3_LYK4_5
LysM3_NFP
HTH_23
Motif
Other DBs
NCBI-ProteinID:
QCU90370
UniProt:
A0A4P9K7D1
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All DBs
Position
1512367..1514184
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AA seq
605 aa
AA seq
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MTAPTNSLIPVNSIVKPHLLSLGLISILTLNGCVSNQSLQSSSQSQTSPLPPQTQVPANQ
SNGYAHNERVDITPDHPVADIEQAVEKQRFEPIIWNAMRGNFELSRHYLGQYNDYIKFFE
QRKKHLERVSERAEPYMYYIYNQVQSRQLPYELALLPIIESGFRPHARSHQRAVGLWQFI
PSTAELYDLDRNWWYDARKDVVSSTEAALSYLQKLYKLNNNDWLLALASYNGGIGNVYKA
QRKYRKKHNLSNDSNPDFWQIRPYLPRETQSYVPKLLAVAHLIEKAEDYQLALAPVANRP
FFTVIELEKQVALNQVASLSNTPLSLLESLNPGYHQMATPPKGPFNVILPIDNAQQLQQK
LPSNPQIYAVQWQKYKIRSGDSLSVIAHKFKTSTGAIKALNGMKNSRIRAGKTLLIPIPA
ALVDTVNKQLAGKPSQGSVKSASKPKQPTHWHTVKAGDSIWELARYYNVSNSTLCQWNNI
DMKTPLRIGQKLAIYKEHYRKKLSHTVKNGENLWVIGNRYGVSSKDIAGWNGISRKKPLQ
PGQVLTIWSKGAPSEHIVKSGDNLWLIAKANQLSAKKLAEFNQLSLNKPLQPGQVILIPI
NDKQS
NT seq
1818 nt
NT seq
+upstream
nt +downstream
nt
ttgaccgcacccactaactcactcattcccgttaattcaatcgttaaacctcacctgcta
agtttgggtctgatcagtattctgaccttgaatggttgtgtctcaaaccagagtttgcag
agttcatcgcaaagccaaacaagtccattgccccctcagactcaggtgccagcgaaccaa
agcaatggctacgcccataatgaacgggtcgacatcaccccggatcatccggtggccgat
attgaacaggccgtggaaaaacagcgttttgaaccgattatctggaatgcgatgcgcggc
aacttcgagttgagtcgtcactatttgggtcaatacaacgactacatcaagttttttgaa
cagcgcaaaaaacacttggagcgggtttccgagcgtgccgagccttatatgtactatatc
tataaccaagtacagagccgccaactgccttatgaactcgccctattgccgattatcgaa
agcggtttcagaccgcatgcacgatcacaccaacgcgcggtcggtttatggcagttcatt
cccagtaccgctgaactttacgatttggatcgaaactggtggtacgatgcccgaaaagat
gtcgtatccagtaccgaagccgcactgagctatctgcaaaaactctataagctgaataat
aacgattggttactggccttagcgtcttataacggtggcataggcaatgtctataaagcg
cagcgtaaataccgtaaaaaacataacctaagcaacgacagcaatccggatttttggcaa
atcaggccttacctgccaagagaaacccagtcttatgtgcccaagctgctggcggtggcc
cacctaatcgaaaaagccgaagactatcagctcgcattggcaccggttgccaaccgccct
ttctttaccgttatcgaactggaaaaacaggtcgccttgaatcaggtcgccagtttatcg
aatacgccgttgtctcttttggaatcgctcaacccgggttatcatcagatggctaccccg
ccaaaaggaccattcaatgttatcttgccgattgacaatgcccagcaactgcaacaaaaa
ttaccgagtaacccgcagatttatgcggtgcagtggcaaaaatacaagattcgttccggt
gacagcttgagtgtcattgcgcataaattcaagacctcgacaggtgcgatcaaggctttg
aacggcatgaagaacagccgcatccgcgccggaaaaaccctgttgattccgattccggct
gctctggtcgatacggtcaataaacagcttgccggcaaaccatcgcaaggttcggtaaag
tccgccagcaaacccaaacaaccaacccattggcataccgtcaaagccggcgattcgatt
tgggaactggcgcgctattacaatgtctccaacagcaccctgtgccagtggaacaatatc
gacatgaaaacgccgctgcgtatcggtcaaaaattggctatctataaagagcattaccgc
aaaaagctcagccataccgtcaagaacggtgaaaacctgtgggtcatcggtaaccgttac
ggtgtcagcagcaaggacattgccggttggaatggtatttctcgcaaaaaaccgctacag
cccggacaagtcctgaccatctggagcaaaggcgcccctagtgaacatattgttaaatcg
ggcgataatctttggttgattgccaaagccaatcagcttagtgcgaagaaattggccgaa
ttcaatcaactctccttaaacaagccgttgcagccgggtcaggtcattttaattccaata
aatgacaagcaaagttag
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