Thiomicrorhabdus sediminis: FE785_08380
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Entry
FE785_08380 CDS
T05983
Name
(GenBank) peptidase S13
KO
K07259
serine-type D-Ala-D-Ala carboxypeptidase/endopeptidase (penicillin-binding protein 4) [EC:
3.4.16.4
3.4.21.-]
Organism
thig
Thiomicrorhabdus sediminis
Pathway
thig00550
Peptidoglycan biosynthesis
thig01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
thig00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
FE785_08380
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
thig01002
]
FE785_08380
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
thig01011
]
FE785_08380
Enzymes [BR:
thig01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
FE785_08380
Peptidases and inhibitors [BR:
thig01002
]
Serine peptidases
Family S13: D-Ala-D-Ala peptidase C family
FE785_08380
Peptidoglycan biosynthesis and degradation proteins [BR:
thig01011
]
Peptidoglycan biosynthesis and degradation
DD-Carboxypeptidase/DD-Endopeptidase (Low molecular weight PBP)
FE785_08380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_S13
DUF1380
Motif
Other DBs
NCBI-ProteinID:
QCU90648
UniProt:
A0A4P9K6W9
LinkDB
All DBs
Position
complement(1833645..1834973)
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AA seq
442 aa
AA seq
DB search
MHLLRKFLLMAALFFAASIAPASGAQNAPVNTAAQQNEKANAEQNVQSVLGRLAQQPAWQ
HFQSFAEAGFVIDTPQGIKRFNAGQAFVPASTTKLITALLALRHWGDAYRFKTEFYIKRT
ATQNILLVKGFGDPFLVSEELALIAQQLKQNLMQLQISHIDAIYLDDSFYQSDLIMPGTL
WSDNPYDAIPSAIAANFNTINVKRVSRQGSIEIISAEAQTPITQTAQQFALTHKLKSSKA
LRINLGQDLSVNQRHFAELLAAFLQQESLTVGQTVANGVVDNTFQPLYSHDNSRTLADVI
EPMMKYSTNFIANQLALNLAADQFGAPANPKKVAKLYQQALQQLFGWQDFLVEDGAGLSR
QNRLSPDQLLEVLQAFKPWRYLLPQVENHVVAKSGSLIGVSTLAGFYQYKNTSLPFVIMI
NEQGPYRLRNRLARELAEFYRR
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgcatttgttaagaaaatttttgttaatggcggcgctgttttttgcggcttctattgct
ccggctagcggcgcacaaaatgcgcctgtcaatacagcggcacagcaaaacgagaaggca
aatgctgagcaaaacgtgcagagcgtgttagggcgtttggctcagcagcccgcttggcag
cattttcagagttttgccgaagccggttttgtgattgacacgcctcaaggaattaaacgc
tttaacgccggtcaggcatttgtgccggcctcgaccaccaaattgataactgccttgctg
gcactgcgacactggggagatgcataccgtttcaagaccgagttttatattaaacgcact
gccacgcagaacatcttattggtaaaaggttttggcgacccgtttttggtttcagaagag
ttggctctgatagcccagcagttaaagcagaatttgatgcagttgcagataagtcatatt
gatgcgatttatttggatgacagtttttatcagtccgatttaattatgccgggtacctta
tggtcggataatccgtatgatgcaattccttctgcgatcgcagcaaacttcaataccatc
aatgtcaaacgcgtcagccgccaaggaagtatagaaatcatcagtgccgaagcacagacg
ccgataactcaaaccgcacagcagtttgccttgacgcataagctcaaatcatcaaaagct
ttgcgtatcaacctgggtcaggatttatcggttaatcaacgtcatttcgccgaattacta
gccgcgtttttacagcaagagtcgctaacggttggccaaactgtagcaaatggtgttgtt
gataatacttttcagcctctttatagccatgacaacagtcgtactctggcggatgtcatt
gaaccgatgatgaagtattcgaccaactttattgccaatcaactggcgcttaatctggcc
gcggatcaattcggcgcaccggccaatcccaaaaaggtggctaaattgtatcaacaggct
ttacagcagctgttcggttggcaggattttctggttgaggacggtgcgggtctttcacgg
caaaaccgcttgtcgccggatcagttgcttgaagtgctgcaggcctttaaaccctggcgg
tatttattgccgcaggtcgaaaatcatgtggtggccaaatcgggttcacttatcggcgtg
agtaccttggcagggttttatcaatataaaaatacatcgttaccctttgtcattatgatt
aatgagcaagggccttatcggttacgtaatcgcttagccagagaattggctgagttttat
cgccgataa
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