Thiomicrorhabdus sediminis: FE785_08425
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Entry
FE785_08425 CDS
T05983
Name
(GenBank) hypothetical protein
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
thig
Thiomicrorhabdus sediminis
Brite
KEGG Orthology (KO) [BR:
thig00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
thig03400
]
FE785_08425
Enzymes [BR:
thig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FE785_08425
DNA repair and recombination proteins [BR:
thig03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
FE785_08425
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_22
PDDEXK_1
AAA_30
DEAD
AAA_11
RNase_J_b_CASP
Mg_chelatase
Motif
Other DBs
NCBI-ProteinID:
QCU90657
UniProt:
A0A4P9K8L3
LinkDB
All DBs
Position
complement(1842263..1845844)
Genome browser
AA seq
1193 aa
AA seq
DB search
MKHDTQHDLFAEQAAQPEVMNNHSTDLLSQYGLQCDNALADGPQRFQAINPLHSYIVQAP
AGSGKTSLLAQRFLALLSQVEAPEQILAMTFTKKAAAEMRERILKALQSGVEPLSDDASL
VDANTWKLAQQALRRDAEQGWSLLKNPNRLRIKTIDGLNSYLVTQMPLLSKMGGQSRIVD
DANDIYLQAVRATLKDKALTEAVGRLLRLVNGRFNRAENLLTSMLAKRDQWMRTLLQFQG
DEARFQLEGSLAEIVEQSLAQSLDAIYYLSGAFDKACQIADYAQNNDQPQLAVLSNAWPL
QKSIEDASKWQVLAQWVLTKDGKSIRKRLTKNEGFPSGKGEAAEQKSAFAEVLETIQAAV
STDAKVLAALQLLKNLPQPHYSDQQWQDLQWLIQILVRCLGYLQLAFQQVQQVDHIEVAQ
AASLALGSELEPTELAQQLDYQIQHLLVDEFQDTSSEQYRLLTQLVAGWQPDDGRTLFLV
GDPMQSIYRFREAEVGNFLTAWQGRIGEVALKPLSLAVNFRSSAAVIDWVNFAFKKVLPK
ENAIEKGAVSYSDSIAASDNREPAIFTDWQLNQSAQQEAEKVVELVKARLQEFAQQPTGK
KRQIAILGRSRSSLISIANELKQQAVPFRAVDLQSLHERQEVQDILALTRALLHSADRGA
WVALLRSPLVGLNLPDLHRLLDLAPYKTAVHALNNWQKHPEQNESVLSTEANQRLQTAWP
LLQRAINAIGRTGLAQLVKEVWLMLDGPQTVDSEMALQNIDVFCQTLQQAIEDSQGGSLD
WQKLELYLAKLYARPDSSPESEQVELMTMHKSKGLEFDTVILPGLGRAPRGDDAALVSWF
QFMDDAAEEHLVIAPIDQKGTNESPLRTLLKGFETEKQRYELGRVLYVAATRAKQQLHLF
GQVSFKIDKADSLPKPAKDSLLESLWPVVENDFIDLAQACDEDPQQASDMLLPWPKVPRL
RLQRNGFEALSALAKQQAYTATELTPLKSALKEMTLTEIDDEGHSTSAQGAEMKFSVQNA
LLNTSVGNLVHAIFEQWAQTGFSGFDETQFNRQKPAYEFWLSQAGLSAAELNQALQRVKR
SLLNASTNAKMQWALSGEHQQAAEEYALTSMTDNQVSNHIIDRTFIDATGVRWIIDYKTS
VYKGEDKQQFVEYHSEKYLSQLQRYGELFDQLEQRDQKWVLYFSDADIWHELN
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atgaaacatgatacgcaacacgatctttttgccgaacaggcagcgcaacccgaagtgatg
aacaaccattcaaccgaccttttaagccaatacggtttgcaatgcgataatgctttagcc
gatggtccgcagcgttttcaggcaatcaatcctttgcattcctatattgtccaggcaccg
gcgggttcgggaaagacctcgttattggcgcaacgctttttggctttattgtcgcaggtg
gaagcgcccgaacagattctggccatgacctttaccaaaaaagccgcagcggagatgcgc
gaacgtattttaaaggcgttgcaatcgggggttgagcctttaagcgatgatgccagtctg
gtcgatgccaatacctggaagctcgcccagcaggcattaagacgagatgccgagcaaggc
tggtcgctgttgaaaaatccgaaccgtttgcgtatcaagaccattgatggcttgaatagt
tatctggtcacgcagatgccgctgttatcaaaaatgggcggacaaagtcgcattgtcgat
gacgccaatgacatttacctgcaagcggtgcgtgccaccttaaaggataaggcattaacc
gaagcggtagggcgactgctacgtctggtgaatggccgcttcaatcgcgcggaaaaccta
ttgacctcgatgctggcaaaacgtgaccagtggatgcgcactctgttgcagtttcaaggt
gatgaagcgcgtttccagctggaaggctcgctggctgaaattgtcgagcaaagtttagcg
cagagcctggatgcgatctattatttaagtggtgcttttgacaaagcctgtcagattgcc
gactatgcacaaaacaacgatcagccgcaattggctgttttgagcaatgcctggcctttg
caaaagagcatagaagatgcgtccaaatggcaagtgctggcacaatgggtgttgaccaaa
gacggcaaatcgatccgtaaacgtctaaccaaaaacgaaggttttcctagcggcaaaggc
gaagcggccgaacaaaaatcggcttttgccgaagtgctggaaacgattcaggcggcggta
agtacagatgctaaagtcttagcggctttgcagctgctgaagaatttgccgcaaccgcat
tacagcgatcagcaatggcaggatctgcaatggttgattcagatactagtacgctgtctc
ggttatctgcaactggcgttccagcaagtgcagcaggtggatcacatcgaagtcgctcaa
gccgcttctctggcgttaggttcggagcttgaaccgaccgaattggcgcagcagctggac
tatcaaatacagcatcttttagttgacgagtttcaggataccagtagtgagcagtaccgt
ttattgacacagttggttgccggttggcaacctgatgatggacgcaccttgtttttggtg
ggagatcctatgcagtcgatttaccgtttccgtgaagcagaagtgggtaatttcttgacc
gcttggcaaggccgaattggggaagtggcgttaaagccgttaagtctggcggttaatttc
cgatccagtgcggcggtgatcgattgggtcaattttgccttcaaaaaagtcctgccgaaa
gaaaacgccattgaaaaaggcgcagtttcttatagtgattcgattgccgcatcggataac
cgtgaacctgccatttttaccgattggcagctcaaccaaagcgctcagcaggaggccgaa
aaggttgttgagctggtcaaggcgcgtttgcaggagtttgcccagcagccgacaggcaaa
aaacgccaaatagccattctgggacgttcgcgcagtagcttgatcagcattgccaatgaa
ctcaaacagcaagcggtgccgtttcgcgcggtcgatttacaaagtctgcacgaacgtcag
gaagtgcaggatattctggcattgacccgtgctctgttgcacagtgccgatcgcggtgcc
tgggtggccttattgcgctcgcctctagtcggtttgaacctgcccgatttgcatcgtctt
ctcgatttggcgccttataaaaccgccgtacatgcgttaaataattggcaaaaacacccc
gaacagaatgaatcggtcttatcgacagaggccaatcagcgtttgcaaacggcatggccg
ctgttgcagcgagcgattaatgcaattggccgaactggtttggcgcaattggtcaaagag
gtttggttaatgctggacggcccccagacggtggacagtgaaatggcgttgcagaatatc
gatgtattctgtcagactctgcaacaggctattgaagacagtcaaggcggtagtttggat
tggcagaaactggagctttatctggcaaaactctatgcacgcccggacagctctccagaa
agtgagcaggttgaactgatgaccatgcataaatcgaaaggcttggaatttgatacggta
attctgccggggcttggacgagcaccgcgtggtgatgatgccgcgctggtgtcgtggttc
cagtttatggacgatgcggccgaagagcatttggtcatcgcgccgattgaccaaaaaggc
accaatgaatcccctttacgtaccttattaaaaggttttgaaacggaaaaacagcgttat
gaattgggccgagtgttatatgttgccgcgactcgtgccaaacagcagcttcacctgttc
ggccaagtcagttttaagatcgataaggccgacagtttacccaagccggcgaaagacagc
ctgctggaaagcctttggccggtagtggaaaacgattttatcgacctggcgcaagcctgt
gacgaagaccctcaacaagccagtgatatgcttttgccttggcctaaggtgccgcgtttg
aggttgcaacgtaatggtttcgaagccttgtctgcgctagcaaaacaacaggcttataca
gccacggagctaactccgttgaagagtgctttaaaagaaatgacgcttaccgaaattgat
gatgaaggccactcaacttcagcacagggggcagaaatgaaattttcagtacagaatgcc
ttgttgaatacctctgtggggaatctggtgcatgccatatttgagcagtgggcgcaaacc
ggctttagcggctttgatgagacacagtttaaccgacaaaaacccgcctatgagttctgg
ttaagccaagccggtttatccgctgcagaactcaaccaggccttgcaaagggtcaaacga
tcgctattgaacgccagcactaatgccaaaatgcagtgggcgctatcaggcgagcatcaa
caggccgcggaggaatatgcgttgacctcaatgaccgacaatcaggtcagcaatcatatt
atcgaccgcacctttatcgatgcaaccggtgtgcgctggattatcgattacaagaccagt
gtctataagggtgaagataaacaacagtttgtcgaatatcacagtgaaaaatatcttagc
cagttgcaacgctatggagagttgttcgatcagctcgaacagcgagatcaaaaatgggtg
ctctatttcagtgatgccgatatttggcatgaattgaattga
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