Thiomicrorhabdus sediminis: FE785_10130
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Entry
FE785_10130 CDS
T05983
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
thig
Thiomicrorhabdus sediminis
Pathway
thig03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
thig00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FE785_10130 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
thig03021
]
FE785_10130 (rho)
03019 Messenger RNA biogenesis [BR:
thig03019
]
FE785_10130 (rho)
Transcription machinery [BR:
thig03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
FE785_10130 (rho)
Messenger RNA biogenesis [BR:
thig03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FE785_10130 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_25
FtsK_SpoIIIE
ResIII
AAA
S1CSD-TOTE-2
nSTAND_NTPase5
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QCU90957
UniProt:
A0A4P9K9E8
LinkDB
All DBs
Position
2231375..2232631
Genome browser
AA seq
418 aa
AA seq
DB search
MHLLDLKKQSAAKLLDLASSMGLDNLARLRKQDIIFAILKAHSKQGEDIYGEGVLEILPD
GFGFLRSSDGSYLAGPDDLYVSPSQIRRFGLRTGDTIQGKIRPPKEGERYFALLKVEKIN
FEDPEVARKKIAFENLTPLHAQDRLKMELGNGSTEDITARIIDIASPFGKGQRGLIVAPP
KSGKTVILQQMAQSIAENYPEAHLIVLLIDERPEEVTEMERTVKGEVISSTFDEPAARHV
QVAEMVIEKAKRLTEHKKDVIILLDSITRLARAYNTVTPASGKILSGGVDANALHRPKRF
FGAARNIEEGGSLTIIATALVETGSKMDEVIFEEFKGTGNMELHLSRNIAEKRTFPAINL
TKSGTRKEELLMPPDELQNVWILRRFLGAMNEIEAIETLIDQMKVSKTNDALFEAMKR
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgcatctactcgatttaaaaaaacaatctgcagccaagcttcttgatttagcttccagt
atggggctagacaaccttgcacgtctgcgtaaacaagacattatcttcgctattttaaaa
gcgcactctaaacagggtgaagacatttatggcgaaggtgtattggaaatcctgcctgac
ggcttcggtttcttgcgttcttccgacggctcctatcttgccggaccggatgatctttat
gtttcacctagccagatccgtcgtttcggtttgcgcaccggtgataccattcaaggtaaa
atccgtccgccaaaagaaggcgaacgttatttcgcgttattgaaagttgagaagatcaac
tttgaagaccctgaagtggcgcgtaaaaagattgcttttgagaacttgacgcctctacat
gcgcaagatcgtttgaaaatggaactgggtaacggcagcaccgaagatattactgcacgt
attatcgacatcgcctcgccattcggtaaaggtcaacgtggtttgatcgtggcgccgcca
aaatccggtaaaaccgtgattttgcagcagatggcacagtcaattgcggaaaactatccg
gaagcgcacttaatcgtattgctaatcgatgagcgtccggaagaagtgaccgaaatggaa
cgtaccgttaagggtgaagtgatttcatcgaccttcgacgagccggcggcacgtcacgtt
caggttgctgaaatggtgatcgaaaaagccaaacgcctgaccgagcacaagaaagatgtc
attatcctgttagactcgattacccgtctggcacgtgcttacaatacggtaacgcctgca
tccggtaagattctatcaggaggtgttgatgccaacgcgctgcaccgtcctaagcgtttc
ttcggtgctgcacgtaatatcgaagaaggtggttccttgaccattattgcgaccgctctg
gttgaaaccggttccaaaatggatgaggttatcttcgaagaattcaaaggtaccggtaat
atggaactgcacttgtcgcgtaatattgccgagaagcgcaccttcccagcgattaacctg
accaagtccggtactcgtaaggaagagctgttaatgccgcctgatgaattacagaacgtt
tggattttacgtcgtttcctaggcgcgatgaacgaaatcgaagcgattgaaaccctgatt
gaccagatgaaagtatcgaaaaccaatgatgctttgtttgaagcaatgaaacgctaa
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