Thiocapsa sp. M50B4: KFB96_00290
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Entry
KFB96_00290 CDS
T07253
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
thim
Thiocapsa sp. M50B4
Brite
KEGG Orthology (KO) [BR:
thim00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thim03019
]
KFB96_00290 (hrpB)
Enzymes [BR:
thim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KFB96_00290 (hrpB)
Messenger RNA biogenesis [BR:
thim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KFB96_00290 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
HA2_N
ResIII
Motif
Other DBs
NCBI-ProteinID:
QVL49023
LinkDB
All DBs
Position
complement(59749..62268)
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AA seq
839 aa
AA seq
DB search
MDPLPIEPVLEDLRAVLRRGHAVLQAPTGSGKSTRVPLALLDEDWLGAGRILMLQPRRPA
ARMIAARMAALLGEPLGERVGYQIRFERRIGPRSRIEVITEGILTRRIQSDPTLEGVGLL
VFDEFHERSLQSDLGLALALDLVAGLRPDLRLLLMSATLDAEPLAGLLGDAAVIRGAGRS
FPVKVQYADRAPGPDAVAAVISGVRSALAEHSGDILAFLPGTGEINRCVARLRELVGERT
RILPLHGSLSTEEQEKALGPNAGSERRVLVSTDIAETSLTIPGIQVVIDSGLTRKPRFDP
GSGLTRLVTEPIARASAEQRTGRAGRLGPGVCYRLWTRAQEQGRPERRTPEILQADLASL
VLELRLWGVADPNALRWVDPPPGPAWEAAVTLLTRLGALDARSAITPLGRRMAELPVHPR
LAVMLLGAAESARGDAADLCALITERDPLLDTPGQRRPADLGLRLQALHAWRERRSVPGA
DARRLASADRVSQQLQRLTRNAQTGSARPGSARSAAELLALAYPERIAQRREGTDGRYRL
AGGSGALLPQDDALAIHPYLVIASLDAAGADGRIQSALPIAESEIRTCFAERIEVSRRLF
WDTQREAVAARTIECLEAITLRAQPVPLEAKDDVAGILLEQIAARFDQALAWSDAALQFS
ARVALMRRLEPDGGWPDLSPEALRADLRVWLAPYVNGMSRLAQTQKLDLMPILASRLDWG
QRQRLDSDAPTRIETPAGRDRSIDYCAGETPILAVQLQELFGLAETPRIARGRVPLLLHL
LSPARRPIQVTQDLAGFWARGYAEVRKELRGRYPKHAWPEDPTRATPVAGVRRPRRAED
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atggacccactgccgatcgagcccgttctggaggatctgcgcgcagtgctgcgtcgcgga
cacgccgtgctccaagcgccgaccggctcgggtaaatccacccgggtcccgctcgctttg
ctcgatgaagactggctcggcgccggccgcatcctcatgcttcagcctcggcgcccggcg
gcacgcatgatcgccgcgcgcatggccgcgctcttgggcgagccgctcggcgagcgcgtc
ggctaccagatccgcttcgagcgccggatcggcccgcgcagccgcatcgaggtcatcacc
gagggcatcctgactcgacgcatccagtccgaccccacgctcgaaggggtcgggctcctg
gtgttcgacgagtttcacgaacgcagcctgcaatcggatctggggctggcccttgcgctg
gatctggtcgccggtcttcgcccggatctacggctgctgttgatgtccgcgaccctcgac
gccgagccgctggccggacttctgggcgatgcggccgtcatccgcggcgcgggacggagc
ttccccgtcaaggtccagtatgccgaccgtgcccccggtccggatgccgtcgctgcggtg
atctccggggtgcgctccgcgctggccgagcattcgggcgacattctggcattcctcccc
ggcacgggcgagatcaaccgctgcgtcgcgcggctgcgcgagctggtgggcgagcggacc
cggatcctgccgctgcacggcagtctctcgaccgaggagcaggagaaggcgctgggtccg
aacgcgggatccgagcgccgcgtgctggtctccaccgatatcgccgagaccagcctgacg
atcccgggcatccaggtggtgatcgacagcggtctgacccgcaagccgcgcttcgatccc
ggctccgggctcacgcgcctggtgaccgaacccatcgcgcgcgcctccgccgagcagcgc
accgggcgcgccgggcggctggggccgggtgtctgctatcggctctggacccgcgcgcag
gagcaaggccggcccgagcgccgaacgcccgagatcctccaggccgatctggcctcgctg
gtcttggagctacgcctctggggcgtggcggatccgaacgcactgcgctgggtcgatccg
ccgcccggcccggcgtgggaggccgccgtcacactcctgacgcgcctcggcgccctggat
gcgcgcagcgccatcaccccgctcggccggcggatggcggagctgccggtgcatccgcga
ctggccgtcatgctgctcggcgccgccgagtcggcccgcggcgatgccgccgatctgtgc
gcgttgatcaccgagcgcgacccgctactcgacacgcccggacaacgccgccccgccgac
ctgggtctgcgtctgcaagccctgcatgcctggcgcgaacggcgctcggtgccgggtgcg
gacgcgcggaggctcgcctcggccgatcgggtctcgcaacagttgcagcggctgacgcgc
aacgcccaaaccggatccgctcggcccggatcggcccgctcggctgccgagctgctcgcc
ctcgcctacccggagcgcatcgcacaacggcgcgagggcaccgacgggcgctatcgtctg
gccggcggatccggtgcgctcttgccgcaggacgatgccctggcaatccacccctatctg
gtcatcgccagcctcgacgccgcaggcgcggacgggcggatccagtccgcactccccatc
gccgagtccgagatccgcacgtgcttcgccgagcggatcgaggtgagccgccgccttttc
tgggatacccagcgcgaggcggtggccgcccgtaccattgagtgtctggaggcgattacc
ctgcgggcgcaacctgtgcccttggaggccaaggacgatgtcgccggcatcctgctcgag
cagatcgccgcgcgatttgaccaggccctcgcgtggagcgatgccgcgctccaattcagt
gcccgggtcgccctgatgcgtcgactcgagcccgacggcggctggccggatctctcgccc
gaggcgctgcgcgcggatctccgtgtctggttggcgccctatgtgaacgggatgtcacgg
ctcgcgcagacccaaaagctcgacctcatgccgatcctggcctcgcgactcgactggggt
cagcgacaacgcctcgacagcgacgccccgacccgaatcgagaccccggcaggccgggat
cgatcgatcgactattgcgccggcgagaccccgatcctcgccgtccaactgcaggagctc
ttcggtcttgccgagaccccgcgcatcgctcgcgggcgcgtccccctgctgctgcaccta
ctctcgcccgcacgtcgcccgatccaggtcacccaggacctcgccggcttctgggcgcga
ggttacgcggaggtccgcaaggagctgcgcggacgctaccccaaacacgcctggccggag
gatccgacccgggcgacaccggtcgcgggtgtccgtcgtccccgtcgagccgaggactga
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