Thiocapsa sp. M50B4: KFB96_02395
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Entry
KFB96_02395 CDS
T07253
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
thim
Thiocapsa sp. M50B4
Brite
KEGG Orthology (KO) [BR:
thim00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
thim03009
]
KFB96_02395 (rlmD)
Enzymes [BR:
thim01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
KFB96_02395 (rlmD)
Ribosome biogenesis [BR:
thim03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
KFB96_02395 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
TRM5-TYW2_MTfase
RrnaAD
MTS
Cons_hypoth95
Methyltransf_11
PCMT
Methyltransf_23
Methyltransf_15
PrmA
DOT1
Methyltransf_12
Motif
Other DBs
NCBI-ProteinID:
QVL49398
LinkDB
All DBs
Position
506734..508059
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AA seq
441 aa
AA seq
DB search
MSRKRKPLPQEPVEAEIEGLTHEGRGLAHFDGKAVFIDGALAGERVRFRYTRIQRRFDEG
VVVEVLRPSPERVVPKCSHFGVCGGCSLQHMDAGAQIRAKQDSLADVLSRIGKVTPQTWL
APLTAGAWGYRRKARLGVRYVAKKGRTLVGFRERGNAFITDIGRCEVLHPSVGAHLQAIG
AAVDALSIREQVPQIEVAMGDTPPVLVFRALSPPSAADLGVLEALGESEGFHIYLQEAGP
ESIRPLPGQGITLHYELPRYALRIEFEPTDFTQVNLELNRSMLDQALALLDVQADERVLD
LFCGVGNFTLPLARQAQAVVGVEGDAGLVARAEANADLNKIGNARFYTADLYGALDQEPW
SREGFTKALLDPPRSGALEVLDWLPRLGVEKVLYVSCYPTTLARDADRLVNALGYRLVSA
GVMDMFPQTAHVESMALFERC
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgagaaaacgcaaaccacttccgcaggagcctgtcgaggccgagatcgagggcctc
acgcacgagggtcgcggattggcgcacttcgacggcaaggcggtctttatcgacggcgca
ctcgccggggagcgggtgcgttttcggtatacgcgtatccagcgtcgcttcgacgaaggt
gtcgtcgtcgaggtgctgcgaccgtcgcccgagcgcgtggtgcccaagtgcagccatttc
ggtgtctgcggcggttgcagcctgcagcatatggatgcgggtgcccagattcgcgccaag
caggacagtcttgcggacgtgctctcgcgcatcgggaaggtgaccccgcagacctggctc
gcgcccttgacggcgggtgcttgggggtaccggcgcaaggcgcggctcggtgtgcgttat
gtggccaagaaaggccgtacgctcgtgggttttcgcgagcgggggaatgccttcatcacc
gacatcggccgctgcgaggtgcttcacccgagtgtcggggcgcatttacaggcgatcggg
gccgcggtggatgccctgagcatccgcgagcaggtgcctcagatcgaggtggcgatgggc
gatacgccgccggtcttggtgttccgcgccttgagtccgccaagtgcggccgacttgggc
gtgctcgaggcgctcggcgagagcgagggtttccacatctatcttcaggaggctggaccg
gagagcatccggccgctgcccggtcaggggatcaccctgcattacgagctgccgcgctac
gctctgcggatcgagttcgagccgaccgacttcacccaggtcaacctggagctgaatcgg
tcgatgcttgaccaggcgctcgcactcctggatgtccaggccgacgagcgggtgttggac
ctcttctgcggcgtgggcaacttcaccttgccgctcgcccgtcaggcccaagcggttgtc
ggggttgaaggtgatgccggattggtggcgcgtgcagaggcgaatgcggacttgaacaag
atcgggaacgcccgcttctatacggctgatctgtatggcgcgctcgatcaggagccctgg
tcgcgcgagggcttcaccaaggcactgctggatccgcctcgcagcggtgcgctcgaggtg
ctcgactggctaccgcggctcggggtcgagaaggtgctctacgtatcctgctatccgacg
acactcgcgcgcgatgccgatcgtctcgtgaatgcgcttggatatcggcttgtttcggcg
ggggtgatggatatgtttccgcagacggcccatgtggagtcgatggcgctgttcgagcgt
tgctga
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