Thiocapsa sp. M50B4: KFB96_11295
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Entry
KFB96_11295 CDS
T07253
Symbol
hrpA
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
thim
Thiocapsa sp. M50B4
Brite
KEGG Orthology (KO) [BR:
thim00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
thim03019
]
KFB96_11295 (hrpA)
Enzymes [BR:
thim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
KFB96_11295 (hrpA)
Messenger RNA biogenesis [BR:
thim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
KFB96_11295 (hrpA)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_25
AAA_19
nSTAND_NTPase5
ABC_tran
NAT10_TcmA_helicase
AAA_30
nSTAND3
AAA_23
Motif
Other DBs
NCBI-ProteinID:
QVL50929
LinkDB
All DBs
Position
complement(2480982..2485007)
Genome browser
AA seq
1341 aa
AA seq
DB search
MTDQQFPTDADLGTCLIQDRHRLRQRLRGLRRRARAGEPVERGLLAVWQTLRESQALCER
RRAGVPSIIAFPPELPVSERRAEIAEAISAHPVIVLCGETGSGKSTQLPKLCLELGRGLA
GRIGHTQPRRIAARTLANRIAQELGGTAGALVGDKVRFHDRVRPETAIKLMTDGILLAEI
QQDRLLNEYDTLIIDEAHERSLNIDVLLGYLKGLLPRRPDLKLIVTSATIDPQRFAAHFA
DLQGRPAPILEISGRTYPVEVRYRPPEDESVGERDETMQQAISDAVGELARVGRGDVLVF
LSGEREIRETAETLRKHHPPATEILPLYARQGPQEQARIFQSHGTRRVVLATNVAETSLT
VPGIHYVVDPGFARISRYSHRRQLQRLPVERISRASADQRKGRCGRVASGICIRLYSEDN
LAARAAFTEPEIQRTNLAAVILRMKLLGFGDVADFPFLDPPDPRLVADGERTLEELAALD
ARGELTELGRRLARLPVDPRIGRILLAAAEQQCLAEVLVIAAALSVQDPRERPHEQRAAA
DQIHATFAHPDSDFLSFLNLWRFLEKERKALSRNQFRLLCQRHFLSYNRVQEWRDIETQL
REQILEMGFKENQTAGTEEQIHSALLTGLLNHIGALDTNHEYLGARNSRYRIHPSSALFK
TSPKWILAAERVETTRAYGRIVARVQPAWIEAAGQHLLQRSYFEPHWQAKSGQVAAYEKV
TLFGVTLVPKRRVNYGPINPAESREIFIRFALVEGDFSTRAPFWRHNQELIASIHHLEAK
SRRRDILIDEETLYAFYDQRIPAGIYSTPQLEQWLRKATPTDPKLLHLRPTDLMQHEAEW
ITPEHFPDRLQVGATALPLEYRFEPGESADGLTLIVPLPLINQVTAERLDWLVPGLLEAR
ITALLRGLPKGLRTALVPVPDTAARLAGGLKAALAEGKAPVDRPLTQVLAERIAADTGLR
IPEDAWDHDAIPAHLRMKVRLVDEAGRVLALDEDPQRLKQRFGQAGQARFARIPDAELER
EGLTRWDFGDLPEQVEITRGGIRMRGFPALVDEGRNVAVRVLDAPEGAEHAHRAGLRRLL
TLTLGATLRPIRQSLKDLDRLRLLYAKAPAMEPGRPAPESPETKRPGASTSGGQPSRPPS
GSEPRPPDLSDELMALILDRTFLDDRPPIRTQTDFEARLAESRSRLQPTANEVTRLAAEI
LAAYQSLRRRLAAITQVNWQPTTQDLRDQLDALVFRGFFQQIPFDRLKQYPRYLKAAEQR
LDKLAHAPGRDREQMTVMAELLTRWRDRTAAARKAGREDPRLEEIRWLLEELRVSLFAQT
LGTAGPVSVKRIEARWRELGL
NT seq
4026 nt
NT seq
+upstream
nt +downstream
nt
ttgaccgaccaacagtttcccaccgacgccgacctcggcacctgtctgatccaggaccgt
caccggctgcgccaacgtctgcgcggcttgcgccgccgcgcgcgtgcgggcgagccggtc
gagcgcgggctgcttgccgtttggcagacgctgcgcgaatcccaagcgctctgtgaacgg
cgtcgcgcgggcgtcccgtcgatcatcgcctttccgcccgagctgccggtcagcgagcgt
cgtgccgagatcgccgaggcgatctcggcgcacccggtcatcgtcctctgcggcgaaacc
ggctccggcaagtcgacccagctgcccaagctctgtcttgagctcggacgcgggctggcc
gggcggatcggccacacccagccgcggcgcatcgccgcgcgcaccttggcgaatcggatc
gcgcaggagctcggcgggaccgccggcgcgctggtcggggacaaggtgcgcttccacgac
cgggtgcgcccggagaccgcgatcaagctgatgaccgacggcatcctgctcgccgagatc
cagcaggatcggctgctcaacgagtacgacaccctgatcatcgacgaggctcacgagcgc
agcctcaacatcgacgtcctgctcggctatctgaagggtctgctgccgcgccgaccggac
ctgaagctgatcgtgacctccgcgaccatcgatccgcagcgcttcgccgcccacttcgcc
gatctgcagggtcgcccggcgccgatcctcgagatctcgggtcggacctatccggtcgag
gtccgctatcgcccgcccgaggacgaatcggtcggcgagcgcgacgagacgatgcagcag
gcgatctcggacgcggtcggcgagctggcgcgcgtcggacgcggcgacgtgctggtcttt
ctctccggcgagcgcgagatccgcgagaccgccgagaccctgcgcaagcatcatccgccc
gcgaccgagatcctgccgctctacgcccgccaagggccgcaggagcaggcgcggatcttc
cagtcgcacggcacccggcgcgtggtgctggcgaccaatgtcgccgagacctcgctgacc
gttcccggcatccattatgtcgtcgaccccggctttgcgcggatcagccgctacagccac
cgccgccagctccagcgcttgccggtggagcgcatctcgcgcgcctcggccgatcagcgc
aaggggcgctgcgggcgggtcgcctccggcatctgtatccggctctacagcgaggacaac
ctcgccgcacgcgcggccttcaccgagcccgagatccagcgcaccaacctcgccgccgtg
atcctgcgcatgaagctgcttggtttcggcgacgtggccgacttccccttcctggatccg
cccgatccgcgcctggtcgccgacggcgagcgcaccctcgaggagctggccgcgctcgat
gcccgcggcgagctgaccgagctgggccgccggcttgcgcgtctgccggtcgacccgcgg
atcgggcgcatcctgctcgccgccgccgagcagcagtgtctggccgaggtgctggtgatc
gccgccgcgctcagcgtccaggatccgcgcgagcgcccgcacgagcagcgcgccgccgcc
gatcagatccacgccaccttcgcccatccggactcggatttcctgagctttctcaacctc
tggcgcttcctggagaaggagcgcaaggcgctttcgcgcaaccagtttcgcctgctctgt
cagcgtcacttcctctcctacaaccgggtgcaggaatggcgcgacatcgagacccaactg
cgcgagcagatcctggagatgggcttcaaggagaaccagaccgccggcaccgaggagcag
atccacagcgcactcctgaccggactcctgaatcacatcggcgcgctcgacacgaatcac
gagtacctgggcgcgcgcaacagccgctaccgcatccacccgagctcggcactcttcaag
acgtcgcccaaatggatcctcgcggccgagcgggtcgagaccacccgcgcttacgggcgc
atcgtcgcgcgcgttcaaccggcctggatcgaagccgcggggcagcatctgctgcaacgc
agctatttcgagccgcactggcaggccaagtccgggcaggtcgcggcctacgagaaggtg
accctgttcggcgtcaccctggtgcccaagcggcgcgtcaactacggacccatcaacccg
gccgagtcgcgcgagatcttcatccgcttcgccctggtggaaggcgacttcagcacccgt
gcacccttctggcgtcacaaccaggagctgatcgcgtcgatccatcacctcgaagccaag
tcgcgccgtcgcgatatcctcatcgacgaggagacgctctacgccttctacgatcagcgc
atccccgccgggatctattccacgcctcagctcgagcagtggctgcgcaaggcgacccct
acggatcccaagctcctgcatctacgcccgaccgatctgatgcagcacgaggccgagtgg
atcacgcccgagcatttccccgatcggctccaagtcggcgccaccgcgctcccgctcgaa
taccgtttcgagcccggcgagtcggccgacggtctgaccctgatcgtgcccttgccgctc
atcaatcaggtcaccgccgagcggctggattggctggtgccgggactgttggaggcgcgt
atcacggccctgttgcgcggtctgcccaaagggctgcgcacggcgctggtcccggtgccg
gacaccgccgcacgcttggccggcgggctcaaggccgcgctcgccgagggcaaggcgccg
gtcgatcggcctttgacgcaggtcctcgccgagcggatcgcggccgatacgggcctgcgc
atccccgaggacgcctgggaccacgacgccatcccggcgcatctgcggatgaaggtccga
ctcgtcgacgaggcgggcagggtgcttgcgctcgacgaggatccgcaacgtctcaaacag
cgtttcggccaagcggggcaggcgcggtttgcccgcatcccggacgccgagctggaacgc
gagggcctcacccgctgggacttcggcgacctgcccgagcaggtcgagatcacccgcggc
gggatccggatgcgcggctttccggccctggtcgacgaaggccggaacgtggcggtgcgt
gtgctggatgcgcccgagggagccgagcacgcccaccgtgcgggcctgcgccggcttctg
accctgacgctcggtgcgaccctgcgcccgatccgccaatcgctcaaggatctggaccgg
ctgcgtctgctctacgccaaggcgcccgcaatggagccggggcgtcccgccccggaatcc
cccgagaccaagcgtcccggcgcatcgacctccggcggacagccgtcacgcccgccgagc
ggatccgagccccgtccccccgacctctccgacgagctgatggccctcatcctggatcgg
accttcctcgacgaccgtccgcccatccgaacgcagaccgacttcgaggcccgtctcgcc
gaatcccgcagccggctccagccgacggccaacgaggtcacccggctcgccgccgagatc
ctcgccgcctaccaatcactgcgccggcgcctcgccgccattacccaggtcaactggcag
ccgacgacgcaggacctgcgcgaccagctcgatgcactggtcttccggggcttcttccaa
cagatccccttcgaccggctcaagcagtacccgcgctatctcaaggccgccgagcagcgt
ctcgacaagctcgctcacgcccccggacgcgaccgcgagcagatgaccgtcatggccgag
ctcctgacccgctggcgcgaccgcaccgccgcggcccgcaaggccggccgcgaagacccg
cgtctggaggagatccgctggctactggaagaactacgcgtctcgctcttcgcccagacc
ctcggcaccgccggcccggtatcggtcaagcgcatcgaggcgcgttggcgggagttgggg
ttgtag
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